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YP_319859.1

Arc-Vir

NC_007409__YP_319859.1__ATV-gp28__00028

Identity

Accession:
NC_007409 ↗
Protein ID:
YP_319859.1 ↗
Kingdom:
archaea

Quality

73.6 mean pLDDT

Taxonomy

Bicaudaviridae› Bicaudavirus› Bicaudavirus_pozzuoliense

TaxID: 315953

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-96
PDB
Domain cluster: rep: NC_028883.1__YP_009206170.1__PHIMMP01_20051__00052__D2-102
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01402.28 best RHH_1 27.7 2.60e-06 42.1% 92.7%
D2 high residues 114-174
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13894.13 best zf-C2H2_4 22.9 1.40e-04 39.3% 100.0%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c2gA02 1.10.10.1630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sys-1 C-terminal domain-like 0.56 38.0 3.72e-01 100.0% 63.2%
2ghfA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 46.0 4.07e-01 90.2% 87.6%
4mndA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.55 41.0 2.95e-01 82.0% 29.8%
2r6fA04 1.10.8.280 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › ABC transporter ATPase domain-like 0.55 38.0 3.16e-01 73.8% 89.8%
2v94B00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 42.0 3.77e-01 98.4% 96.8%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3411625 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.85 44.0 5.86e-01 100.0% 94.1%
3996122 386.1.1.25 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-H2C2_5 0.80 42.0 5.26e-01 100.0% 82.5%
3751405 386.1.1.234 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-H2C2_2, zf-C2H2_4 0.78 44.0 4.33e-01 96.7% 53.8%
3545116 386.1.1.126 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_7th_ZNF462 0.77 43.0 5.04e-01 96.7% 77.8%
3843041 386.1.1.234 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-H2C2_2, zf-C2H2_4 0.73 46.0 3.88e-01 91.8% 41.1%
3786259 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.73 45.0 3.93e-01 96.7% 43.3%
3509728 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 44.0 4.70e-01 98.4% 76.4%
3622631 386.1.1.306 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29652 0.65 49.0 5.18e-01 80.3% 89.1%
3246264 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 48.0 4.99e-01 93.4% 87.3%
3213949 386.1.1.306 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29652 0.65 48.0 5.01e-01 82.0% 87.3%
3493574 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 45.0 4.44e-01 80.3% 67.7%
3521901 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 48.0 5.25e-01 78.7% 96.0%
3412400 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.64 49.0 5.15e-01 98.4% 89.1%
3573700 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.64 45.0 5.03e-01 77.0% 90.0%
3623676 386.1.1.19 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_2 0.63 55.0 4.41e-01 98.4% 93.3%
3935744 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 47.0 4.91e-01 80.3% 89.1%
3216512 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 44.0 4.01e-01 88.5% 57.5%
3578051 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 51.0 5.03e-01 96.7% 90.8%
3526049 3760.1.1.3 ↗ alpha arrays › Protein arginine N-methyltransferase 3 helical domain › Protein arginine N-methyltransferase 3 helical domain › Protein arginine N-methyltransferase 3 helical domain › zf-C2H2_2 0.58 52.0 4.22e-01 96.7% 99.1%
3996563 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 50.0 4.35e-01 96.7% 62.1%
3227473 3760.1.1.3 ↗ alpha arrays › Protein arginine N-methyltransferase 3 helical domain › Protein arginine N-methyltransferase 3 helical domain › Protein arginine N-methyltransferase 3 helical domain › zf-C2H2_2 0.57 52.0 4.15e-01 100.0% 95.0%
3220798 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 50.0 4.81e-01 96.7% 84.3%
3226056 708.1.1.29 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › PF29862, PF29863 0.57 52.0 3.97e-01 100.0% 93.3%
3586304 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.56 52.0 3.96e-01 100.0% 92.3%
3584303 386.1.1.19 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_2 0.54 42.0 2.59e-01 83.6% 16.1%
3624264 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 41.0 4.32e-01 96.7% 87.3%