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YP_319867.1
Arc-VirNC_007409__YP_319867.1__ATV-gp36__00036
Identity
- Accession:
- NC_007409 ↗
- Protein ID:
- YP_319867.1 ↗
- Kingdom:
- archaea
Quality
80.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-97
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.62 | 36.0 | 4.35e-01 | 77.6% | 100.0% |
| 2o7gA00 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.61 | 44.0 | 4.38e-01 | 88.2% | 73.9% |
| 6pe0E01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.60 | 36.0 | 4.25e-01 | 89.4% | 94.3% |
| 2b2hA00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.57 | 48.0 | 3.17e-01 | 95.3% | 22.5% |
| 1z5bB03 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.56 | 46.0 | 3.89e-01 | 97.6% | 53.0% |
| 5cqgA03 | 1.10.10.2210 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 34.0 | 3.51e-01 | 77.6% | 64.6% |
| 1wmwB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.55 | 47.0 | 3.27e-01 | 98.8% | 27.0% |
| 2yn7A00 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.55 | 48.0 | 3.64e-01 | 100.0% | 44.4% |
| 4lqkA00 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.55 | 40.0 | 3.54e-01 | 78.8% | 90.2% |
| 3cexA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.54 | 42.0 | 3.44e-01 | 85.9% | 94.1% |
| 1mswD04 | 1.10.287.280 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 35.0 | 3.65e-01 | 81.2% | 71.8% |
| 7lb8B01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.54 | 43.0 | 2.92e-01 | 85.9% | 46.7% |
| 7e84A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 36.0 | 3.30e-01 | 70.6% | 74.0% |
| 1dm1A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 38.0 | 3.25e-01 | 82.4% | 43.8% |
| 1np3B02 | 6.10.240.10 | Special › Helix non-globular › ProC C-terminal domain-like fold › | 0.54 | 37.0 | 3.20e-01 | 72.9% | 65.5% |
| 1q5nA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.54 | 39.0 | 2.89e-01 | 78.8% | 89.7% |
| 2xzeB00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.53 | 38.0 | 3.22e-01 | 74.1% | 79.0% |
| 3ljcA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 38.0 | 3.34e-01 | 76.5% | 62.7% |
| 3bexA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 35.0 | 3.23e-01 | 70.6% | 74.1% |
| 1q90B00 | 1.20.810.10 | Mainly Alpha › Up-down Bundle › Cytochrome Bc1 Complex; Chain C › Cytochrome Bc1 Complex; Chain C | 0.52 | 38.0 | 2.93e-01 | 80.0% | 72.6% |
| 2mjfB00 | 1.20.1440.260 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.51 | 34.0 | 3.27e-01 | 98.8% | 60.0% |
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 39.0 | 3.95e-01 | 89.4% | 82.1% |
| 2eh3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 36.0 | 3.22e-01 | 85.9% | 52.5% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4331100 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.67 | 33.0 | 3.16e-01 | 70.6% | 43.2% |
| 3788953 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.64 | 55.0 | 5.43e-01 | 92.9% | 93.3% |
| 3796658 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.63 | 38.0 | 4.68e-01 | 70.6% | 94.5% |
| 3226769 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 47.0 | 5.10e-01 | 91.8% | 98.6% |
| 3465927 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.60 | 32.0 | 3.28e-01 | 100.0% | 51.2% |
| 5083369 | 604.4.1.0 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP | 0.60 | 33.0 | 3.28e-01 | 72.9% | 49.5% |
| 353472 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.57 | 39.0 | 3.56e-01 | 70.6% | 81.7% |
| 3526049 | 3760.1.1.3 ↗ | alpha arrays › Protein arginine N-methyltransferase 3 helical domain › Protein arginine N-methyltransferase 3 helical domain › Protein arginine N-methyltransferase 3 helical domain › zf-C2H2_2 | 0.56 | 46.0 | 4.25e-01 | 88.2% | 80.0% |
| 4180013 | 1128.1.1.8 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › PF29574 | 0.53 | 46.0 | 4.54e-01 | 100.0% | 92.2% |
| 3631867 | 3755.4.1.55 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › HeLo | 0.53 | 45.0 | 3.67e-01 | 96.5% | 73.5% |
| 4951651 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.53 | 33.0 | 3.72e-01 | 72.9% | 80.9% |
| None | — | 0.52 | 42.0 | 4.04e-01 | 92.9% | 95.0% | |
| 3976610 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.52 | 43.0 | 4.12e-01 | 94.1% | 99.0% |
| 3776020 | 386.1.1.19 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_2 | 0.52 | 41.0 | 2.98e-01 | 92.9% | 32.2% |
| 3994526 | 7579.1.1.1 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase | 0.51 | 43.0 | 2.65e-01 | 94.1% | 34.3% |
| 4016091 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.51 | 36.0 | 3.60e-01 | 72.9% | 72.9% |
| 3731914 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.50 | 35.0 | 3.00e-01 | 72.9% | 45.0% |
| 3590118 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.50 | 42.0 | 3.76e-01 | 95.3% | 78.4% |