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YP_319875.1

Arc-Vir

NC_007409__YP_319875.1__ATV-gp44__00044

Identity

Accession:
NC_007409 ↗
Protein ID:
YP_319875.1 ↗
Kingdom:
archaea

Quality

94.1 mean pLDDT

Taxonomy

Bicaudaviridae› Bicaudavirus› Bicaudavirus_pozzuoliense

TaxID: 315953

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-182
PDB
Domain cluster: rep: IMGVR_UViG_3300020079_000070-3300020079-Ga0187906_100258017__D1-167
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04055.28 best Radical_SAM 41.9 1.70e-10 76.5% 68.7%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wstA04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 31.0 3.51e-01 91.8% 61.1%
1vc1A00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.61 39.0 4.58e-01 90.0% 96.4%
3ie7A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 48.0 3.95e-01 87.6% 58.9%
5j60B02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 35.0 4.13e-01 91.8% 87.5%
1rkxA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 44.0 4.22e-01 81.8% 100.0%
7tbvB02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 41.0 3.67e-01 92.4% 53.3%
2l82A00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 39.0 4.02e-01 85.3% 74.7%
2hroA03 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.55 46.0 3.66e-01 88.2% 83.5%
2jjqA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 40.0 3.82e-01 90.6% 64.2%
2nwqA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 42.0 3.88e-01 78.8% 100.0%
1f3lA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 33.0 3.53e-01 96.5% 68.5%
4mzyA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 37.0 3.81e-01 86.5% 69.6%
3gl3D00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 30.0 3.28e-01 85.9% 65.0%
1zzmA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.54 45.0 3.88e-01 92.4% 57.5%
3i4fC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 45.0 4.05e-01 90.6% 97.9%
1y1pA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 45.0 3.62e-01 90.6% 81.3%
3eurA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 31.0 3.41e-01 85.3% 70.0%
3vhrA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 39.0 3.54e-01 77.6% 91.5%
4x7rA03 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 37.0 3.77e-01 88.2% 74.0%
3bt7A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 41.0 3.77e-01 91.2% 64.3%
8k1fC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 40.0 3.87e-01 84.7% 79.6%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036891 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.93 77.0 6.45e-01 98.2% 54.9%
4991598 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.92 75.0 6.22e-01 94.1% 53.2%
4933060 2002.1.1.221 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF5131 0.81 60.0 5.31e-01 80.6% 55.7%
5027493 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.81 75.0 6.06e-01 97.1% 57.7%
4955479 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.79 72.0 5.86e-01 95.3% 55.5%
4671710 2007.1.18.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) › Radical_SAM 0.64 47.0 5.26e-01 84.7% 97.0%
3960577 2496.1.1.0 ↗ a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like 0.63 39.0 4.61e-01 88.8% 90.4%
4024756 2496.1.1.0 ↗ a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like 0.62 39.0 4.76e-01 90.0% 100.0%
5034755 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.59 38.0 4.32e-01 85.9% 87.2%
3632376 2003.1.5.21 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS 0.59 36.0 4.07e-01 96.5% 77.8%
3299082 7512.1.1.1 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.54 38.0 4.29e-01 88.2% 100.0%
3724647 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.54 43.0 4.16e-01 84.7% 99.0%
5000670 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.54 43.0 4.55e-01 90.0% 96.0%
5000511 2006.1.4.3 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN 0.53 42.0 4.32e-01 82.9% 87.2%
3942463 2007.1.3.39 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › PF27348 0.53 34.0 3.71e-01 89.4% 75.9%
4179809 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.52 38.0 4.05e-01 81.8% 84.7%
4969557 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.51 38.0 3.63e-01 75.9% 97.4%
4478130 2003.1.5.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 0.51 41.0 4.02e-01 87.1% 85.7%
5077848 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 43.0 3.92e-01 89.4% 71.4%
4979159 2002.4.1.3 ↗ a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › NAPRTase_C 0.50 37.0 3.03e-01 94.1% 40.6%
3385629 2002.1.1.128 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NAPRTase 0.50 39.0 3.77e-01 87.6% 72.6%
D2 medium residues 183-294
PDB
Domain cluster: representative
CATH (73)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eb2A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.78 55.0 4.02e-01 96.4% 28.5%
3d0cB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.74 52.0 3.79e-01 97.3% 27.3%
3tsmA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.74 47.0 3.56e-01 100.0% 27.6%
5e97A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.73 59.0 4.47e-01 90.2% 38.1%
3bg3A02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.71 56.0 3.91e-01 96.4% 28.3%
6ndsA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.71 59.0 4.26e-01 100.0% 32.5%
2ovlA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.71 49.0 3.87e-01 100.0% 34.8%
1f6kC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 50.0 3.73e-01 96.4% 29.5%
2q02A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.70 56.0 4.20e-01 94.6% 35.3%
1mzhA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 50.0 4.03e-01 96.4% 37.8%
2ftpA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.68 57.0 4.13e-01 100.0% 33.3%
3milB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.68 61.0 4.78e-01 100.0% 65.5%
2oczA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 45.0 3.64e-01 98.2% 35.3%
4qnwA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 58.0 4.07e-01 96.4% 37.7%
6mp7A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.67 58.0 4.10e-01 94.6% 50.6%
4n4pD00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 50.0 3.66e-01 100.0% 30.9%
4uwmA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.65 58.0 4.10e-01 100.0% 38.4%
1lucB00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.65 58.0 4.15e-01 98.2% 39.4%
4kw2A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.65 49.0 3.79e-01 94.6% 37.1%
3qc0A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.65 56.0 4.22e-01 94.6% 45.4%
3wqoA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.65 57.0 4.23e-01 94.6% 48.0%
2ekgA02 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.64 52.0 4.05e-01 100.0% 39.9%
3kwsA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.64 55.0 4.15e-01 92.9% 50.9%
3ayvD00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.64 55.0 4.23e-01 92.9% 50.8%
1i60A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.64 55.0 4.13e-01 94.6% 56.9%
4ap5A02 3.40.50.11350 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 39.0 3.43e-01 85.7% 40.7%
5diyA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 57.0 4.18e-01 100.0% 38.5%
2jl1A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 53.0 4.55e-01 100.0% 59.6%
1h7nA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 56.0 3.93e-01 100.0% 37.6%
2zdsB00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.61 54.0 3.86e-01 96.4% 51.9%
1uumA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 55.0 3.86e-01 100.0% 33.7%
5tnvA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.61 53.0 3.88e-01 96.4% 50.3%
3n2oA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.61 54.0 4.07e-01 100.0% 44.3%
1gkpA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.61 54.0 3.78e-01 97.3% 39.4%
3dx5A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.60 52.0 3.89e-01 93.8% 47.3%
3tvaA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.60 52.0 3.85e-01 93.8% 48.6%
3tdnA00 3.40.50.12600 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 45.0 4.42e-01 100.0% 73.6%
2vzoA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 52.0 3.70e-01 95.5% 37.8%
3p6lA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.59 52.0 3.93e-01 94.6% 48.9%
2agkA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 44.0 3.53e-01 100.0% 38.2%
3zidB00 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.59 50.0 3.55e-01 92.9% 87.4%
1ffyA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 44.0 3.04e-01 80.4% 55.4%
3qxbA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.59 53.0 3.89e-01 100.0% 38.7%
1d2kA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 52.0 3.70e-01 97.3% 47.4%
1a9yA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 53.0 4.26e-01 100.0% 66.5%
4s3jB02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 50.0 3.77e-01 94.6% 49.3%
3wy1A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 52.0 3.59e-01 100.0% 36.1%
3q9cA00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.58 51.0 3.64e-01 98.2% 42.8%
1sznA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 51.0 3.76e-01 100.0% 57.5%
2xwpA01 3.40.50.1400 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 42.0 3.95e-01 75.9% 79.1%
5m99A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 51.0 3.60e-01 100.0% 31.2%
1zitA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 43.0 4.25e-01 97.3% 74.4%
4nzpA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 39.0 3.66e-01 100.0% 58.0%
1obhA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 42.0 3.07e-01 78.6% 29.1%
4h0fA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.56 37.0 3.83e-01 77.7% 70.6%
4d6yA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 43.0 4.21e-01 97.3% 75.2%
6uczB00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.55 48.0 3.69e-01 98.2% 58.1%
1d5wA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 42.0 4.12e-01 100.0% 74.8%
3pvzB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 49.0 3.60e-01 100.0% 43.0%
6ks6E03 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.54 37.0 3.31e-01 79.5% 49.4%
1ab5A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 43.0 4.16e-01 97.3% 75.2%
4b8wB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 49.0 4.03e-01 100.0% 68.6%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.54 38.0 3.59e-01 73.2% 79.7%
6znpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 46.0 3.76e-01 94.6% 63.7%
3s7zA01 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 41.0 4.00e-01 81.2% 82.3%
2dxqA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 48.0 4.35e-01 100.0% 89.8%
2ggsA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 47.0 3.86e-01 100.0% 57.6%
6vssA01 3.40.800.10 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain 0.52 47.0 3.38e-01 99.1% 88.5%
3o1iC01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 38.0 3.55e-01 77.7% 61.9%
3a1pB00 3.30.860.10 Alpha Beta › 2-Layer Sandwich › 30s Ribosomal Protein S19; Chain A › Ribosomal protein S19/S15 0.51 30.0 3.40e-01 91.1% 75.3%
2duwA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 43.0 4.00e-01 97.3% 73.7%
4qclA03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 41.0 3.11e-01 86.6% 86.7%
3eccA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 40.0 3.57e-01 97.3% 59.9%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4972341 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.91 87.0 6.19e-01 100.0% 44.1%
5071219 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.90 87.0 6.12e-01 100.0% 41.7%
4972118 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.90 86.0 5.74e-01 100.0% 35.7%
4927825 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.90 86.0 6.07e-01 100.0% 44.7%
5027493 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.90 86.0 6.03e-01 100.0% 41.3%
5019560 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.89 85.0 6.01e-01 100.0% 41.0%
4952925 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.89 85.0 6.25e-01 100.0% 49.2%
5076952 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.89 85.0 6.12e-01 100.0% 44.6%
5034632 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.89 85.0 6.25e-01 100.0% 46.9%
5077461 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.89 85.0 6.16e-01 100.0% 44.1%
5071291 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.89 84.0 6.05e-01 100.0% 44.3%
4992721 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.88 84.0 6.79e-01 100.0% 64.1%
5032582 2002.1.2.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › Hypothetical protein Cthe_0052 0.88 84.0 7.06e-01 100.0% 72.8%
5036891 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.88 84.0 6.12e-01 100.0% 43.2%
3973046 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.87 83.0 5.81e-01 100.0% 43.5%
4999341 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.86 82.0 6.05e-01 100.0% 43.5%
5035238 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.85 80.0 5.93e-01 99.1% 45.5%
5038426 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.82 77.0 5.48e-01 100.0% 37.4%
151365 2002.1.1.195 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › SPL 0.82 77.0 5.31e-01 100.0% 40.0%
5018576 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.80 71.0 5.01e-01 100.0% 32.6%
3970604 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.80 70.0 5.14e-01 100.0% 36.9%
5050649 2002.1.1.444 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF1848 0.79 73.0 5.36e-01 100.0% 42.5%
3286714 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.77 71.0 5.05e-01 100.0% 35.9%
5068058 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.76 67.0 4.92e-01 100.0% 37.2%
5060174 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.76 68.0 4.95e-01 100.0% 37.2%
5034887 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.76 67.0 4.87e-01 100.0% 35.6%
5030930 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.76 67.0 4.64e-01 100.0% 30.1%
4955890 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.75 63.0 4.38e-01 100.0% 29.1%
5053413 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.74 68.0 5.05e-01 100.0% 75.6%
3326303 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.73 67.0 4.75e-01 100.0% 35.3%
3587896 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.73 66.0 4.82e-01 100.0% 37.7%
3972156 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.72 66.0 4.53e-01 100.0% 30.7%
3294358 2002.1.1.25 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.71 57.0 4.07e-01 100.0% 29.7%
4605530 2002.1.1.25 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.71 59.0 4.25e-01 100.0% 32.3%
3490807 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.71 58.0 5.06e-01 97.3% 58.6%
4962430 2002.1.1.25 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.71 57.0 4.09e-01 100.0% 30.6%
3996037 2002.1.1.25 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.70 59.0 4.21e-01 100.0% 31.6%
3421509 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.69 44.0 4.08e-01 97.3% 50.7%
3443492 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.67 43.0 4.05e-01 93.8% 53.3%
4878526 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.67 58.0 4.35e-01 93.8% 48.3%
3181162 7570.1.1.4 ↗ a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › PF27239 0.66 56.0 4.94e-01 93.8% 74.1%
139338 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.65 59.0 4.10e-01 100.0% 39.0%
4468990 2493.1.1.2 ↗ a/b three-layered sandwiches › MurF and HprK N-domain-like › MurF and HprK N-domain-like › MurF and HprK N-domain-like › Hpr_kinase_N 0.65 40.0 3.74e-01 91.1% 49.6%
5042576 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.65 45.0 4.07e-01 100.0% 52.7%
3427896 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.65 44.0 4.02e-01 97.3% 53.1%
3258855 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.64 45.0 4.14e-01 76.8% 56.2%
3960636 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.63 55.0 4.23e-01 97.3% 49.1%
4034136 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.61 52.0 3.75e-01 100.0% 33.7%
2581410 2002.1.1.150 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NAGidase 0.61 55.0 4.12e-01 100.0% 39.7%
144846 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.60 52.0 3.85e-01 93.8% 48.6%
3924352 246.2.1.7 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B 0.59 52.0 3.88e-01 97.3% 38.2%
4015871 2002.1.1.186 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Melibiase_2 0.59 54.0 3.92e-01 100.0% 39.3%
4970319 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.59 52.0 3.91e-01 96.4% 58.1%
4118739 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.59 40.0 3.74e-01 70.5% 66.9%
4014553 2002.1.1.186 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Melibiase_2 0.58 51.0 3.83e-01 99.1% 51.4%
3330163 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.58 45.0 3.08e-01 100.0% 23.5%
4928346 2004.1.1.1219 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF7504 0.57 49.0 4.17e-01 98.2% 57.3%
3819899 2004.1.1.474 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N, MMR_HSR1 0.57 46.0 3.63e-01 87.5% 85.5%
5022414 7570.1.1.6 ↗ a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › PF27274 0.57 44.0 4.48e-01 97.3% 84.5%
3194229 7512.1.1.27 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › O-FucT 0.56 45.0 3.60e-01 94.6% 45.4%
3424761 2003.1.5.99 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › SRR1 0.56 43.0 3.46e-01 92.0% 41.9%
4971973 2004.1.1.790 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GvpD_P-loop 0.56 51.0 4.03e-01 99.1% 53.3%
3924471 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.55 41.0 3.46e-01 100.0% 44.0%
4986366 2004.1.1.1219 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF7504 0.55 50.0 4.27e-01 100.0% 70.7%
3992143 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.55 50.0 4.45e-01 100.0% 83.7%
3593835 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.55 49.0 3.51e-01 97.3% 35.0%
3961009 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 50.0 3.25e-01 100.0% 41.9%
4392874 2004.1.1.272 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA12 0.55 49.0 3.72e-01 100.0% 49.1%
4029642 7579.1.1.73 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF900 0.55 47.0 3.46e-01 94.6% 54.5%
4938252 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.54 47.0 3.96e-01 96.4% 72.8%
2426537 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.54 47.0 3.70e-01 97.3% 74.1%
3386764 2007.1.14.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA 0.54 36.0 3.62e-01 78.6% 66.1%
3607716 7573.1.1.2 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.54 48.0 4.16e-01 100.0% 65.6%
3403978 2006.1.1.16 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_like,Hydrolase_6 0.54 39.0 3.45e-01 94.6% 50.0%
3284101 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.54 41.0 3.90e-01 97.3% 67.4%
4969563 2007.1.14.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA 0.53 35.0 3.42e-01 78.6% 58.9%
4947885 2003.1.1.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › CoA_binding_2 0.52 44.0 4.19e-01 100.0% 78.5%
5018122 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.52 43.0 3.87e-01 100.0% 65.2%
3637572 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.51 43.0 2.89e-01 92.9% 42.5%
3210066 7579.1.1.51 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF676 0.50 44.0 3.14e-01 100.0% 50.1%