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YP_319884.1
Arc-VirNC_007409__YP_319884.1__ATV-gp53__00053
Identity
- Accession:
- NC_007409 ↗
- Protein ID:
- YP_319884.1 ↗
- Kingdom:
- archaea
Quality
61.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 61-248
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00004.36 best | AAA | 83.1 | 3.50e-23 | 72.9% | 98.5% |
D2
high
residues 253-304
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fsjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.65 | 45.0 | 3.30e-01 | 100.0% | 27.5% |
| 4wriA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.64 | 51.0 | 3.58e-01 | 92.3% | 51.3% |
| 2f22A00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.64 | 47.0 | 3.44e-01 | 78.8% | 78.9% |
| 4zbwA02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.60 | 47.0 | 4.18e-01 | 98.1% | 78.2% |
| 2w4sA00 | 1.10.10.1440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain | 0.59 | 42.0 | 3.72e-01 | 80.8% | 48.8% |
| 1yaxB00 | 3.30.450.140 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PhoQ sensor domain | 0.58 | 43.0 | 3.25e-01 | 80.8% | 100.0% |
| 6nifA01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.58 | 52.0 | 3.43e-01 | 100.0% | 52.0% |
| 1yg2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 40.0 | 3.54e-01 | 78.8% | 60.8% |
| 1e8oA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.55 | 39.0 | 3.49e-01 | 75.0% | 63.5% |
| 5yuyA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.55 | 37.0 | 2.89e-01 | 71.2% | 41.0% |
| 4z7fB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.55 | 40.0 | 2.87e-01 | 80.8% | 28.6% |
| 4inaA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 46.0 | 3.19e-01 | 100.0% | 91.9% |
| 4h17A00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.54 | 46.0 | 3.11e-01 | 96.2% | 76.1% |
| 1go4A00 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.54 | 44.0 | 3.10e-01 | 100.0% | 78.1% |
| 1biqA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.54 | 38.0 | 2.34e-01 | 78.8% | 11.8% |
| 3ecoB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 2.94e-01 | 78.8% | 69.8% |
| 2jokA01 | 1.10.4120.10 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain | 0.53 | 38.0 | 2.65e-01 | 76.9% | 57.1% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 36.0 | 3.56e-01 | 73.1% | 91.4% |
| 2qenA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 43.0 | 3.97e-01 | 92.3% | 84.3% |
| 3uh0A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.53 | 43.0 | 2.75e-01 | 94.2% | 99.7% |
| 1nubA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 40.0 | 3.01e-01 | 86.5% | 55.6% |
| 4cvnA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 45.0 | 3.16e-01 | 100.0% | 79.9% |
| 8p5sA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.52 | 42.0 | 2.86e-01 | 100.0% | 89.8% |
| 1pp0B00 | 3.40.198.10 | Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like | 0.52 | 42.0 | 2.96e-01 | 98.1% | 58.2% |
| 2gsqA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 39.0 | 3.33e-01 | 86.5% | 84.0% |
| 2vxzA02 | 1.10.10.1490 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.51 | 39.0 | 3.39e-01 | 84.6% | 51.7% |
| 4qicC01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.51 | 43.0 | 3.36e-01 | 100.0% | 80.0% |
| 1u8vB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 42.0 | 2.92e-01 | 100.0% | 40.8% |
| 2pexA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 40.0 | 2.96e-01 | 84.6% | 65.4% |
| 3szpA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 39.0 | 3.32e-01 | 86.5% | 89.9% |
| 17gsA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 40.0 | 3.31e-01 | 90.4% | 76.8% |
| 1b48A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 40.0 | 3.33e-01 | 90.4% | 82.3% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5001086 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.62 | 44.0 | 3.03e-01 | 76.9% | 21.0% |
| 3962675 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.61 | 45.0 | 4.00e-01 | 88.5% | 53.8% |
| 3883917 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.60 | 43.0 | 2.97e-01 | 76.9% | 33.5% |
| 4022303 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.60 | 51.0 | 3.74e-01 | 98.1% | 60.0% |
| 3856302 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.60 | 44.0 | 3.00e-01 | 78.8% | 36.0% |
| 3213789 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.60 | 35.0 | 3.49e-01 | 73.1% | 56.4% |
| 3979390 | 192.2.1.5 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 | 0.60 | 51.0 | 3.88e-01 | 98.1% | 88.0% |
| 3973891 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.59 | 49.0 | 3.43e-01 | 100.0% | 43.1% |
| 3171534 | 3470.1.1.46 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › VanZ | 0.58 | 42.0 | 3.50e-01 | 80.8% | 42.4% |
| 3505456 | 5067.1.1.16 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MgtC | 0.58 | 46.0 | 3.59e-01 | 100.0% | 84.3% |
| 4940192 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.58 | 40.0 | 3.16e-01 | 75.0% | 36.8% |
| 5062752 | 2498.1.1.6 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 | 0.57 | 48.0 | 2.80e-01 | 100.0% | 37.9% |
| 5042214 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.57 | 40.0 | 2.64e-01 | 76.9% | 17.0% |
| 5053794 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.56 | 47.0 | 3.63e-01 | 100.0% | 80.0% |
| 5042736 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.56 | 42.0 | 2.93e-01 | 84.6% | 31.9% |
| 4679576 | 3265.1.1.1 ↗ | alpha arrays › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › GIDA_C_1st | 0.56 | 41.0 | 3.50e-01 | 90.4% | 46.7% |
| 3715713 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.55 | 45.0 | 3.82e-01 | 100.0% | 62.0% |
| 4952304 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.55 | 46.0 | 3.07e-01 | 96.2% | 27.0% |
| 3229733 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.55 | 44.0 | 2.69e-01 | 90.4% | 33.6% |
| 3332131 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.55 | 47.0 | 3.29e-01 | 100.0% | 63.3% |
| 3739470 | 192.2.1.31 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 | 0.55 | 38.0 | 2.85e-01 | 76.9% | 26.9% |
| 5010922 | 633.6.1.3 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › HpaB | 0.55 | 45.0 | 3.29e-01 | 100.0% | 50.6% |
| 4954786 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.55 | 39.0 | 3.38e-01 | 76.9% | 55.3% |
| 5010054 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.54 | 43.0 | 3.16e-01 | 88.5% | 52.0% |
| 5003867 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.54 | 42.0 | 3.04e-01 | 100.0% | 45.5% |
| 4509560 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.54 | 35.0 | 2.25e-01 | 73.1% | 12.5% |
| 3194261 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 47.0 | 3.65e-01 | 100.0% | 75.7% |
| 3598773 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.53 | 43.0 | 2.93e-01 | 94.2% | 72.7% |
| 3187789 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.53 | 40.0 | 2.58e-01 | 90.4% | 17.9% |
| 3991811 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.53 | 44.0 | 2.92e-01 | 100.0% | 30.6% |
| 4981233 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.53 | 36.0 | 2.33e-01 | 75.0% | 13.3% |
| 3787647 | 192.2.1.31 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 | 0.52 | 36.0 | 2.98e-01 | 73.1% | 38.0% |
| 3213629 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.52 | 37.0 | 2.32e-01 | 76.9% | 97.2% |
| 3204146 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.52 | 45.0 | 3.01e-01 | 100.0% | 54.4% |
| 3737536 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.52 | 42.0 | 2.70e-01 | 94.2% | 23.4% |
| 4014117 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.52 | 39.0 | 2.50e-01 | 86.5% | 16.1% |
| 3388598 | 109.4.1.398 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FANCI_S1 | 0.52 | 36.0 | 2.55e-01 | 73.1% | 27.2% |
| 3601928 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.51 | 42.0 | 2.90e-01 | 100.0% | 36.7% |
| 7045 | 858.1.1.1 ↗ | a+b three layers › CytB endotoxin-like (Pfam 01338) › CytB endotoxin-like (Pfam 01338) › CytB endotoxin-like (Pfam 01338) › Bac_thur_toxin | 0.51 | 42.0 | 2.94e-01 | 98.1% | 57.6% |
| 3486361 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.51 | 41.0 | 2.77e-01 | 100.0% | 22.7% |
| 3938678 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.51 | 36.0 | 2.38e-01 | 75.0% | 86.5% |
| 3731014 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.51 | 38.0 | 2.44e-01 | 86.5% | 16.7% |
| 3950478 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.50 | 41.0 | 3.85e-01 | 100.0% | 98.6% |
| 5028015 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.50 | 38.0 | 2.85e-01 | 100.0% | 29.3% |
D3
medium
residues 1-59
D4
medium
residues 340-457
D5
medium
residues 458-529