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YP_319897.1
Arc-VirNC_007409__YP_319897.1__ATV-gp66__00066
Identity
- Accession:
- NC_007409 ↗
- Protein ID:
- YP_319897.1 ↗
- Kingdom:
- archaea
Quality
61.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 10-59
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x7dB01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.67 | 40.0 | 2.70e-01 | 88.0% | 17.8% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3581965 | 7512.1.1.18 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycogen_syn | 0.77 | 56.0 | 3.26e-01 | 78.0% | 10.0% |
| 3734862 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.62 | 49.0 | 2.87e-01 | 88.0% | 24.6% |
D2
medium
residues 60-204
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20030.6 best | bpMoxR | 74.8 | 7.10e-21 | 97.2% | 60.5% |
| PF07726.18 | AAA_3 | 29.6 | 7.90e-07 | 87.6% | 91.6% |
| PF07728.21 | AAA_5 | 41.1 | 2.50e-10 | 86.2% | 93.5% |
D3
medium
residues 250-367
Domain cluster:
rep: IMGVR_UViG_3300006181_000014-3300006181-Ga0079042_10008481__D4-114
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1g8pA02 | 1.10.8.80 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain | 0.73 | 43.0 | 5.17e-01 | 79.7% | 88.5% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.60 | 41.0 | 4.64e-01 | 83.1% | 95.4% |
| 3b0bB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.59 | 40.0 | 4.42e-01 | 79.7% | 84.5% |
| 5wbwA01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.57 | 48.0 | 4.38e-01 | 91.5% | 91.1% |
| 1ysyA00 | 1.10.8.370 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › nsp7 replicase | 0.56 | 36.0 | 4.12e-01 | 81.4% | 89.4% |
| 2k77A00 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.56 | 48.0 | 4.47e-01 | 92.4% | 95.2% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.55 | 37.0 | 4.05e-01 | 91.5% | 83.0% |
| 1b8dA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.54 | 45.0 | 4.10e-01 | 94.9% | 65.9% |
| 6w6jD01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.54 | 44.0 | 4.30e-01 | 88.1% | 100.0% |
| 1w36F02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 42.0 | 4.50e-01 | 90.7% | 99.0% |
| 1bvp103 | 1.10.170.10 | Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 3 › Bluetongue Virus 10, subunit 1, domain 3 | 0.53 | 27.0 | 3.00e-01 | 82.2% | 57.3% |
| 2nrlA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 44.0 | 4.11e-01 | 89.0% | 73.1% |
| 1k6kA00 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.52 | 43.0 | 4.12e-01 | 90.7% | 97.2% |
| 6azyA01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.52 | 46.0 | 4.49e-01 | 94.9% | 96.9% |
| 5y27A00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.52 | 38.0 | 4.06e-01 | 80.5% | 90.8% |
| 4wzsB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.52 | 36.0 | 3.70e-01 | 83.9% | 74.3% |
| 1khyD00 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.52 | 44.0 | 4.23e-01 | 92.4% | 96.4% |
| 1cpcA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.52 | 42.0 | 3.84e-01 | 94.9% | 65.4% |
| 3iu5A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.51 | 39.0 | 3.96e-01 | 78.8% | 97.4% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 43.0 | 4.07e-01 | 94.9% | 78.5% |
| 2sasA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.51 | 44.0 | 3.88e-01 | 98.3% | 82.2% |
| 3qbeA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.51 | 45.0 | 3.93e-01 | 98.3% | 70.5% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.51 | 38.0 | 3.24e-01 | 78.8% | 79.0% |
| 4csrA00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.50 | 35.0 | 3.91e-01 | 82.2% | 96.6% |
| 4n1yB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.50 | 43.0 | 3.52e-01 | 95.8% | 78.9% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4117572 | 148.1.3.25 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_8 | 0.80 | 54.0 | 5.80e-01 | 80.5% | 80.0% |
| 3289135 | 148.1.3.315 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF5682 | 0.74 | 47.0 | 5.64e-01 | 80.5% | 100.0% |
| 5025644 | 148.1.3.20 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 | 0.74 | 47.0 | 5.59e-01 | 83.9% | 96.2% |
| 5000867 | 148.1.3.20 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 | 0.69 | 55.0 | 5.28e-01 | 85.6% | 73.3% |
| 5028412 | 148.1.3.20 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 | 0.66 | 50.0 | 4.49e-01 | 80.5% | 69.7% |
| 5051690 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 45.0 | 4.99e-01 | 98.3% | 93.3% |
| 3278839 | 590.1.1.1 ↗ | alpha bundles › Citrobacter dihydroxyacetone kinase extra ATP-binding domain › Citrobacter dihydroxyacetone kinase extra ATP-binding domain › Citrobacter dihydroxyacetone kinase extra ATP-binding domain › Dak2 | 0.61 | 46.0 | 3.83e-01 | 79.7% | 99.0% |
| 5044337 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.59 | 40.0 | 4.44e-01 | 78.8% | 85.3% |
| 3428130 | 148.1.2.1 ↗ | alpha arrays › Histone-like › Histone-related › double Clp-N › Clp_N | 0.57 | 48.0 | 4.30e-01 | 91.5% | 84.8% |
| 4178561 | 148.1.2.1 ↗ | alpha arrays › Histone-like › Histone-related › double Clp-N › Clp_N | 0.56 | 47.0 | 4.36e-01 | 91.5% | 92.0% |
| 3316630 | 148.1.2.1 ↗ | alpha arrays › Histone-like › Histone-related › double Clp-N › Clp_N | 0.56 | 49.0 | 4.33e-01 | 97.5% | 93.7% |
| 4355828 | 148.1.2.1 ↗ | alpha arrays › Histone-like › Histone-related › double Clp-N › Clp_N | 0.55 | 47.0 | 4.22e-01 | 91.5% | 88.1% |
| 5017862 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.55 | 31.0 | 3.07e-01 | 79.7% | 50.4% |
| 3724732 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.54 | 49.0 | 4.71e-01 | 100.0% | 94.1% |
| 4645591 | 148.1.2.1 ↗ | alpha arrays › Histone-like › Histone-related › double Clp-N › Clp_N | 0.54 | 48.0 | 4.44e-01 | 96.6% | 90.7% |
| 3647944 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.54 | 37.0 | 3.94e-01 | 77.1% | 80.0% |
| 3926428 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.54 | 39.0 | 4.24e-01 | 83.9% | 94.7% |
| 3597285 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.53 | 39.0 | 4.16e-01 | 78.0% | 90.0% |
| 3595345 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.53 | 38.0 | 4.21e-01 | 79.7% | 97.8% |
| 3969256 | 148.1.2.1 ↗ | alpha arrays › Histone-like › Histone-related › double Clp-N › Clp_N | 0.53 | 46.0 | 4.31e-01 | 94.9% | 95.2% |
| 3449867 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.53 | 38.0 | 3.90e-01 | 78.0% | 77.4% |
| 3789652 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.53 | 39.0 | 3.83e-01 | 81.4% | 70.8% |
| 3590870 | 148.1.2.1 ↗ | alpha arrays › Histone-like › Histone-related › double Clp-N › Clp_N | 0.53 | 44.0 | 4.13e-01 | 91.5% | 95.9% |
| 5049997 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.52 | 43.0 | 3.96e-01 | 100.0% | 67.7% |
| 4113259 | 2004.1.1.470 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD, UvrD-helicase, UvrD_C | 0.52 | 46.0 | 2.74e-01 | 100.0% | 25.8% |
| 3991353 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.52 | 39.0 | 3.86e-01 | 84.7% | 72.3% |
| 3926693 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.51 | 38.0 | 3.72e-01 | 83.1% | 68.9% |
| 4587004 | 148.1.1.1 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone | 0.51 | 38.0 | 4.03e-01 | 80.5% | 93.0% |
| 3574560 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.51 | 34.0 | 3.86e-01 | 87.3% | 91.1% |
| 3737033 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.51 | 37.0 | 3.68e-01 | 81.4% | 72.8% |
| 51221 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.51 | 42.0 | 3.81e-01 | 94.9% | 66.0% |
| 4029157 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.51 | 43.0 | 4.16e-01 | 94.1% | 82.2% |
| 3784529 | 148.1.1.5 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TFIID-18kDa | 0.50 | 33.0 | 3.74e-01 | 77.1% | 88.9% |
D4
medium
residues 402-496
D5
medium
residues 571-617