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NC_007581.1__YP_398505.1__CST075__00075

Bact-Vir

NC_007581.1__YP_398505.1__CST075__00075

Identity

Accession:
NC_007581 ↗
Kingdom:
phage

Quality

94.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_c-st

TaxID: 12336

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-172
PDB
Domain cluster: rep: HM159959.1__ADL40348.1__phiCTP1_gp47__00047__D2-147
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13353.12 best Fer4_12 51.9 1.40e-13 87.5% 99.3%
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c8fA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.72 68.0 5.91e-01 100.0% 99.2%
4mzyA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.65 45.0 4.50e-01 89.3% 69.0%
2bb0A02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.62 54.0 4.43e-01 92.3% 66.1%
1yhtA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.61 55.0 4.30e-01 96.4% 88.4%
3ianA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 56.0 4.47e-01 99.4% 79.9%
2aamC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 54.0 4.48e-01 96.4% 88.1%
1b30A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 54.0 4.46e-01 98.2% 71.8%
3n4eA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.59 48.0 4.09e-01 91.1% 54.2%
4rr9A01 3.50.80.10 Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-tyrosyl-tRNA(Tyr) deacylase 0.59 41.0 4.57e-01 86.9% 89.6%
3simA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 55.0 4.59e-01 100.0% 79.6%
1tz9A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.59 52.0 4.10e-01 95.8% 88.0%
4l6wB01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.58 46.0 4.55e-01 93.5% 79.3%
3nvaA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 51.0 4.24e-01 94.0% 80.2%
4c6sA00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.57 43.0 4.62e-01 96.4% 91.5%
3wnkA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 52.0 4.11e-01 98.2% 74.3%
4nh0B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 49.0 4.07e-01 94.0% 64.1%
5ijgA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.57 50.0 4.62e-01 94.0% 75.1%
3kzpA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.57 52.0 4.65e-01 98.8% 87.9%
6ssdA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.56 49.0 4.37e-01 94.0% 72.7%
4epkB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.56 51.0 4.10e-01 99.4% 83.9%
7yiyA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.56 49.0 4.32e-01 94.0% 66.0%
2qbyA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 42.0 4.18e-01 91.7% 75.7%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.56 50.0 4.54e-01 99.4% 94.8%
2iusA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 48.0 4.03e-01 95.2% 85.0%
3bc9A02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 50.0 4.12e-01 98.2% 69.0%
2oryA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 44.0 3.55e-01 85.7% 78.2%
1lgyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 48.0 4.10e-01 94.0% 68.3%
5nusA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.54 47.0 4.41e-01 94.6% 99.5%
2dstA00 3.40.50.12270 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 35.0 4.06e-01 94.6% 90.2%
3qtgA01 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.54 48.0 4.31e-01 97.6% 84.2%
3hv8A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.54 49.0 4.34e-01 99.4% 83.5%
3rr1B02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.54 46.0 4.12e-01 91.7% 72.2%
1uswA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 46.0 3.99e-01 92.9% 70.4%
4rweA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 43.0 4.45e-01 91.7% 90.6%
5fbhA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 46.0 4.45e-01 94.0% 88.2%
2qe6A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 45.0 3.87e-01 94.0% 94.4%
2wtbA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 44.0 4.30e-01 90.5% 92.2%
2g5cA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 45.0 4.50e-01 98.8% 94.1%
1byiA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 45.0 4.07e-01 94.0% 88.8%
4dg8A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.51 46.0 3.46e-01 97.6% 63.5%
5a4aA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 44.0 4.17e-01 95.8% 94.7%
3ie7A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 45.0 3.74e-01 98.8% 87.7%
4j0eA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 43.0 4.06e-01 91.7% 87.6%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929229 2002.1.1.232 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fer4_12 0.73 69.0 6.13e-01 99.4% 97.8%
350807 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.72 68.0 5.91e-01 100.0% 99.2%
None — 0.70 66.0 6.06e-01 100.0% 97.1%
5053413 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.69 61.0 5.12e-01 94.0% 88.7%
3603630 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.69 63.0 4.95e-01 100.0% 75.7%
4946491 2496.1.1.0 ↗ a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like 0.69 47.0 5.34e-01 98.2% 92.8%
4958428 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.68 56.0 4.82e-01 85.1% 86.8%
4570560 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 57.0 4.48e-01 91.7% 69.1%
5014251 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 58.0 4.42e-01 94.6% 66.4%
2096142 2002.1.1.125 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM 0.64 57.0 4.38e-01 95.2% 63.2%
5069122 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.64 58.0 4.66e-01 97.6% 90.2%
5027318 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.63 57.0 4.75e-01 98.2% 91.4%
5058373 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.63 56.0 4.80e-01 95.2% 96.2%
4247224 2002.1.1.122 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS 0.63 53.0 4.16e-01 91.1% 58.6%
4367569 2002.1.1.83 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 0.63 54.0 3.96e-01 91.7% 46.7%
4280202 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.62 55.0 4.78e-01 94.6% 87.5%
3417716 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.62 57.0 4.59e-01 98.2% 79.2%
5068764 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.62 58.0 4.51e-01 100.0% 90.4%
4997976 2006.1.6.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.62 49.0 4.62e-01 83.3% 90.0%
3898347 2002.1.1.274 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1, Amidohydro_3 0.61 53.0 4.32e-01 92.3% 59.3%
8887 2002.1.1.33 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_20 0.61 55.0 4.30e-01 96.4% 88.4%
3785858 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.61 54.0 4.19e-01 95.8% 92.3%
3719200 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.61 52.0 4.11e-01 89.3% 73.8%
3603278 2002.1.1.112 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_114 0.61 53.0 4.38e-01 94.6% 83.6%
4467884 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.60 51.0 4.22e-01 92.3% 66.0%
4955531 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.59 54.0 4.41e-01 98.8% 83.5%
5004196 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.59 53.0 4.58e-01 96.4% 85.5%
4993915 2003.1.6.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin 0.59 47.0 4.89e-01 88.7% 90.3%
3902785 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.59 54.0 4.46e-01 98.8% 78.6%
5064842 2006.1.6.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.58 48.0 4.17e-01 86.9% 96.1%
3266560 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.58 52.0 4.58e-01 98.2% 78.7%
3749785 2007.9.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR 0.58 46.0 4.69e-01 85.7% 86.9%
4335308 2006.1.6.38 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF444 0.58 48.0 4.62e-01 89.9% 92.3%
5031998 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 40.0 4.45e-01 95.2% 89.6%
3520123 2007.9.1.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 0.57 43.0 4.64e-01 95.8% 91.7%
4319696 2007.1.3.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 0.57 40.0 4.41e-01 92.9% 86.4%
5076558 2004.1.1.791 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GvpD_bR2 0.57 49.0 4.34e-01 94.0% 73.6%
3912889 2004.1.1.118 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.56 47.0 4.62e-01 88.7% 94.4%
3928086 2006.1.6.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Ku_N 0.56 49.0 4.58e-01 94.6% 98.6%
3900750 2007.9.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR 0.56 45.0 4.52e-01 84.5% 88.8%
3388284 2004.1.1.63 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FtsK_SpoIIIE 0.56 48.0 3.91e-01 95.2% 71.5%
5052615 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.55 49.0 4.53e-01 94.6% 86.7%
3284256 7577.1.1.2 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 0.55 49.0 3.43e-01 95.2% 83.6%
3735204 2003.1.4.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 0.55 48.0 3.82e-01 93.5% 94.8%
3896215 2004.1.1.118 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.55 46.0 4.43e-01 88.7% 89.5%
3627662 2007.15.1.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › MAP3K_TRAF_bd, DRHyd-ASK 0.55 48.0 4.76e-01 94.6% 93.3%
4490055 2007.9.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain 0.55 43.0 4.53e-01 88.7% 91.0%
5050534 2004.1.1.260 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MEDS 0.55 45.0 4.45e-01 89.9% 86.5%
5026350 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.54 47.0 4.28e-01 95.2% 77.8%
5027315 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.54 47.0 4.11e-01 94.0% 77.6%
3937812 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.53 39.0 3.38e-01 78.0% 62.5%
5064933 2004.1.1.141 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CTP_synth_N 0.53 48.0 4.45e-01 98.8% 95.7%
5076140 2007.9.1.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 0.52 40.0 4.37e-01 97.0% 100.0%
5046552 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.52 42.0 3.80e-01 85.1% 76.0%
3549226 2007.9.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR 0.51 44.0 4.42e-01 91.7% 90.6%
3878551 2004.1.1.118 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.51 44.0 4.19e-01 94.6% 77.1%