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NC_007623.1__YP_418050.1__PPEV_gp017__00017
Bact-VirNC_007623.1__YP_418050.1__PPEV_gp017__00017
Identity
- Accession:
- NC_007623 ↗
- Kingdom:
- phage
Quality
73.6
mean pLDDT
Taxonomy
TaxID: 273133
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-111
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1repC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 41.0 | 4.47e-01 | 100.0% | 71.4% |
| 7s03A01 | 1.10.10.1450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 32.0 | 4.35e-01 | 71.8% | 100.0% |
| 1mswD04 | 1.10.287.280 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 38.0 | 4.38e-01 | 70.9% | 93.6% |
| 5kdiA00 | 1.10.3520.10 | Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein | 0.58 | 47.0 | 3.89e-01 | 90.9% | 92.4% |
| 2fp1B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.57 | 44.0 | 3.86e-01 | 80.9% | 86.6% |
| 4od4A01 | 1.10.357.140 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › UbiA prenyltransferase | 0.56 | 40.0 | 3.59e-01 | 72.7% | 74.4% |
| 2rreA00 | 1.10.10.2010 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 35.0 | 4.07e-01 | 76.4% | 93.2% |
| 4h9nC00 | 1.20.58.2170 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 40.0 | 3.33e-01 | 77.3% | 42.0% |
| 6j09A02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.55 | 35.0 | 3.92e-01 | 78.2% | 88.5% |
| 3qwuA03 | 3.30.70.2160 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 40.0 | 3.73e-01 | 78.2% | 85.6% |
| 4g3vA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.54 | 39.0 | 3.43e-01 | 75.5% | 86.4% |
| 6f0cA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.54 | 47.0 | 3.27e-01 | 98.2% | 67.1% |
| 7qocA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.53 | 40.0 | 3.43e-01 | 81.8% | 63.1% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.51 | 43.0 | 4.06e-01 | 91.8% | 78.5% |
| 2zw3A00 | 1.20.1440.80 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain | 0.50 | 37.0 | 3.10e-01 | 77.3% | 89.1% |
| 8an5A01 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.50 | 41.0 | 3.49e-01 | 90.9% | 84.9% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3224502 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.67 | 35.0 | 4.62e-01 | 76.4% | 100.0% |
| 4520559 | 592.2.1.1 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 | 0.65 | 46.0 | 5.13e-01 | 74.5% | 96.5% |
| 3729338 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.63 | 55.0 | 3.45e-01 | 92.7% | 48.4% |
| 5012937 | 304.116.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › acVLRF1 | 0.60 | 36.0 | 3.91e-01 | 99.1% | 68.4% |
| 3847014 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.60 | 51.0 | 5.06e-01 | 93.6% | 86.1% |
| 3584520 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 46.0 | 4.68e-01 | 82.7% | 88.2% |
| 5043656 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.60 | 34.0 | 3.64e-01 | 99.1% | 64.2% |
| 3643488 | 192.15.1.11 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CemA | 0.59 | 30.0 | 3.53e-01 | 79.1% | 69.3% |
| 3587458 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.59 | 27.0 | 3.29e-01 | 76.4% | 64.0% |
| 4956709 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.59 | 36.0 | 3.81e-01 | 99.1% | 68.4% |
| 5011307 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.59 | 36.0 | 3.74e-01 | 99.1% | 65.0% |
| 5005999 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.58 | 44.0 | 3.24e-01 | 80.0% | 49.7% |
| 3707660 | 109.4.1.621 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 | 0.58 | 41.0 | 2.95e-01 | 73.6% | 57.2% |
| 3335753 | 592.6.1.3 ↗ | alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › DExH14_plug | 0.58 | 49.0 | 4.83e-01 | 100.0% | 87.8% |
| 3251428 | 3919.1.1.4 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMMD1_N | 0.56 | 48.0 | 4.87e-01 | 93.6% | 91.8% |
| 3986130 | 2008.1.1.67 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C | 0.56 | 45.0 | 3.28e-01 | 86.4% | 44.5% |
| 3646394 | 4156.1.1.4 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C | 0.56 | 45.0 | 4.28e-01 | 88.2% | 87.4% |
| 4967597 | 7516.1.1.79 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_trans_2_3 | 0.55 | 39.0 | 2.80e-01 | 72.7% | 59.0% |
| 3373319 | 5059.1.1.8 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Mg_trans_NIPA | 0.55 | 39.0 | 3.38e-01 | 75.5% | 73.3% |
| 3495920 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.54 | 35.0 | 3.66e-01 | 98.2% | 71.0% |
| 1807463 | 109.4.1.133 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ChAPs | 0.51 | 39.0 | 2.56e-01 | 80.9% | 84.7% |
| 3615337 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.51 | 38.0 | 3.33e-01 | 78.2% | 92.9% |
| 3903832 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.50 | 42.0 | 3.04e-01 | 92.7% | 82.1% |