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NC_007623.1__YP_418052.1__PPEV_gp019__00019
Bact-VirNC_007623.1__YP_418052.1__PPEV_gp019__00019
Identity
- Accession:
- NC_007623 ↗
- Kingdom:
- phage
Quality
78.7
mean pLDDT
Taxonomy
TaxID: 273133
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-124
Domain cluster:
rep: NC_070936.1__YP_010665493.1__PQB72_gp032__00032__D2-49_150-202
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e98C00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 32.0 | 3.48e-01 | 100.0% | 58.1% |
| 3pcoB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.60 | 34.0 | 3.84e-01 | 100.0% | 71.3% |
| 4acvA00 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.60 | 35.0 | 3.61e-01 | 100.0% | 58.8% |
| 8cwoF01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.59 | 34.0 | 3.82e-01 | 98.4% | 75.6% |
| 5x8tT00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.54 | 44.0 | 4.21e-01 | 100.0% | 75.7% |
| 5v7qT00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 29.0 | 3.26e-01 | 95.9% | 68.4% |
| 1vk6A02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.52 | 32.0 | 3.16e-01 | 100.0% | 56.5% |
| 3ossD00 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.52 | 25.0 | 2.34e-01 | 70.7% | 35.0% |
| 6scxA02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 32.0 | 3.12e-01 | 100.0% | 55.6% |
| 3j7yU00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 29.0 | 3.10e-01 | 100.0% | 62.2% |
| 2w4eA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.50 | 32.0 | 3.12e-01 | 100.0% | 56.9% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5027749 | 304.5.1.3 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 | 0.63 | 34.0 | 3.68e-01 | 100.0% | 61.0% |
| 4941725 | 304.5.1.3 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 | 0.62 | 33.0 | 3.58e-01 | 99.2% | 60.0% |
| 3478512 | 11.1.1.371 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TMEM131_like_N | 0.60 | 30.0 | 3.24e-01 | 100.0% | 54.0% |
| 4182477 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.56 | 30.0 | 3.31e-01 | 100.0% | 64.0% |
| 4147311 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.54 | 30.0 | 3.34e-01 | 100.0% | 65.0% |
| 3457894 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.54 | 30.0 | 3.03e-01 | 100.0% | 53.3% |
| 4599317 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.54 | 30.0 | 3.42e-01 | 100.0% | 71.0% |
| 4448201 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.53 | 30.0 | 3.33e-01 | 100.0% | 67.7% |
| 4057993 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.53 | 30.0 | 3.26e-01 | 100.0% | 66.0% |
| 3992739 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.53 | 34.0 | 2.97e-01 | 100.0% | 42.7% |
| 3835251 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.52 | 31.0 | 3.42e-01 | 98.4% | 73.7% |
| 2121815 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.52 | 29.0 | 3.26e-01 | 95.9% | 68.4% |
| 3506350 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.52 | 35.0 | 3.26e-01 | 100.0% | 55.3% |
| 3239126 | 243.1.1.85 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531 | 0.52 | 37.0 | 3.56e-01 | 73.2% | 88.6% |
| 3839422 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.52 | 28.0 | 3.18e-01 | 100.0% | 68.8% |
| 4808078 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.51 | 29.0 | 3.55e-01 | 96.7% | 89.3% |
| 5039326 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.50 | 33.0 | 3.19e-01 | 100.0% | 57.9% |
| 4026355 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.50 | 29.0 | 3.23e-01 | 100.0% | 72.6% |