←Back to structures
NC_007623.1__YP_418075.1__PPEV_gp042__00042
Bact-VirNC_007623.1__YP_418075.1__PPEV_gp042__00042
Identity
- Accession:
- NC_007623 ↗
- Kingdom:
- phage
Quality
89.7
mean pLDDT
Taxonomy
TaxID: 273133
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-125
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r4gA01 | 1.10.132.70 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.73 | 58.0 | 4.89e-01 | 84.2% | 63.4% |
| 2l01A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 33.0 | 3.86e-01 | 70.2% | 87.0% |
| 6k4yI00 | 1.10.1810.10 | Mainly Alpha › Orthogonal Bundle › Anti-sigma factor AsiA › Anti-Sigma Factor A | 0.55 | 37.0 | 4.08e-01 | 72.8% | 88.6% |
| 4l9mA02 | 1.10.840.10 | Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain | 0.54 | 43.0 | 3.28e-01 | 83.3% | 78.7% |
| 3dwcA00 | 1.10.1370.30 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.54 | 40.0 | 2.65e-01 | 78.1% | 47.1% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 3.99e-01 | 81.6% | 79.0% |
| 1r1uB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 36.0 | 3.97e-01 | 91.2% | 84.9% |
| 1onfA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 47.0 | 3.86e-01 | 96.5% | 93.1% |
| 2obpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 37.0 | 4.21e-01 | 84.2% | 100.0% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 3.96e-01 | 79.8% | 88.9% |
| 2fswA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.87e-01 | 90.4% | 81.4% |
| 5hs7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.93e-01 | 86.0% | 84.7% |
| 1yyvB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 38.0 | 3.87e-01 | 86.0% | 76.8% |
| 2lycA00 | 1.10.10.1890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like | 0.52 | 38.0 | 3.69e-01 | 77.2% | 100.0% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.90e-01 | 89.5% | 84.0% |
| 2va8A03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.51 | 38.0 | 3.14e-01 | 79.8% | 69.4% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 3.92e-01 | 86.0% | 84.8% |
| 6pcoC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 3.95e-01 | 88.6% | 100.0% |
| 1ac1A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 42.0 | 3.62e-01 | 92.1% | 99.5% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.50 | 35.0 | 3.35e-01 | 78.9% | 60.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3263335 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.62 | 39.0 | 4.51e-01 | 84.2% | 90.0% |
| 3391384 | 5030.1.1.0 ↗ | extended segments › Photosystem II reaction center protein L, PsbL › Photosystem II reaction center protein L, PsbL › Photosystem II reaction center protein L, PsbL | 0.60 | 39.0 | 4.43e-01 | 76.3% | 87.1% |
| 3334827 | 7579.1.1.58 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF829 | 0.59 | 45.0 | 3.28e-01 | 78.9% | 53.9% |
| 3595074 | 180.1.1.0 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase | 0.59 | 45.0 | 3.89e-01 | 80.7% | 84.4% |
| 2492495 | 601.33.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD | 0.58 | 39.0 | 3.55e-01 | 83.3% | 51.0% |
| 3361553 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.58 | 31.0 | 3.57e-01 | 89.5% | 69.4% |
| 1097268 | 633.19.1.1 ↗ | alpha bundles › Bromodomain-like › Hypothetical protein lpg2422 helical bundle domain › Hypothetical protein lpg2422 helical bundle domain › DUF6842 | 0.57 | 31.0 | 3.57e-01 | 91.2% | 72.6% |
| 5012928 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.56 | 32.0 | 3.38e-01 | 89.5% | 61.0% |
| 5046136 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 46.0 | 4.37e-01 | 92.1% | 86.4% |
| 4949577 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 42.0 | 4.54e-01 | 91.2% | 98.9% |
| 3307119 | 7579.1.1.58 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF829 | 0.54 | 41.0 | 2.97e-01 | 79.8% | 50.3% |
| 3200036 | 101.1.2.407 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 | 0.54 | 45.0 | 4.22e-01 | 90.4% | 88.6% |
| 3552466 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.54 | 27.0 | 3.27e-01 | 76.3% | 74.3% |
| 5005260 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.52 | 41.0 | 3.16e-01 | 83.3% | 50.8% |
| 5060833 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.52 | 46.0 | 3.26e-01 | 100.0% | 91.5% |
| 4206404 | 103.4.1.26 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Rod-binding | 0.52 | 35.0 | 3.77e-01 | 70.2% | 82.1% |
| 5043439 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 39.0 | 3.27e-01 | 80.7% | 82.9% |
| 4983426 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 34.0 | 3.94e-01 | 85.1% | 96.2% |