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NC_007623.1__YP_418112.1__PPEV_gp079__00079

Bact-Vir

NC_007623.1__YP_418112.1__PPEV_gp079__00079

Identity

Accession:
NC_007623 ↗
Kingdom:
phage

Quality

69.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Elvirus› Pseudomonas_phage_EL

TaxID: 273133

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-134
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o5uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 26.0 3.00e-01 100.0% 47.7%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.57 29.0 3.89e-01 95.9% 93.8%
2aj4B01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.54 41.0 3.28e-01 81.0% 56.0%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 3.98e-01 99.2% 98.8%
1hxdA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 41.0 3.57e-01 88.4% 88.8%
1z0bA00 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.50 36.0 3.02e-01 76.0% 43.8%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3786412 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.55 26.0 3.05e-01 95.9% 61.3%
3300233 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.52 33.0 3.89e-01 95.9% 92.9%
D2 high residues 313-377
PDB
D3 medium residues 168-248
PDB
Domain cluster: rep: NC_070999.1__YP_010675048.1__PQC65_gp135__00135__D175-256
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ymaA00 3.10.310.60 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.70 38.0 3.23e-01 96.3% 31.9%
4euyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 51.0 5.07e-01 87.7% 87.2%
1u9tA01 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.63 37.0 3.02e-01 87.7% 29.7%
4v1ag00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 49.0 4.04e-01 87.7% 55.4%
4v1ap00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 47.0 4.49e-01 86.4% 81.4%
3thoB01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.59 42.0 2.97e-01 74.1% 99.6%
2jvnA00 3.90.640.80 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.57 33.0 2.93e-01 96.3% 36.5%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.57 33.0 4.08e-01 74.1% 94.0%
5oj2A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.70e-01 72.8% 63.2%
3o6qA02 3.30.70.2720 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 32.0 2.87e-01 85.2% 38.6%
1p1jA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 39.0 3.49e-01 75.3% 83.5%
4ffgA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 45.0 3.17e-01 100.0% 93.6%
4pz7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 35.0 3.01e-01 98.8% 40.1%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 46.0 3.44e-01 100.0% 80.7%
1uurA04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 41.0 3.52e-01 85.2% 87.2%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 37.0 3.37e-01 77.8% 85.6%
4ll1C02 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.01e-01 72.8% 57.9%
1epfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.39e-01 72.8% 66.7%
5oj2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.32e-01 72.8% 68.0%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 27.0 2.94e-01 98.8% 57.6%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3741285 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.71 42.0 3.98e-01 92.6% 50.5%
4944798 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.66 46.0 3.21e-01 72.8% 99.3%
4797890 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.63 38.0 3.74e-01 92.6% 56.5%
3448975 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.59 34.0 3.71e-01 95.1% 69.2%
1563534 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.58 41.0 2.94e-01 74.1% 99.6%
5000800 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.56 33.0 3.33e-01 72.8% 56.6%
4991985 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.56 32.0 3.39e-01 71.6% 61.3%
5054817 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.55 33.0 3.40e-01 72.8% 62.7%
5025704 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 33.0 3.60e-01 85.2% 73.8%
2387792 1205.1.1.0 ↗ a+b two layers › C-terminal domain of CdiA toxin 0.55 34.0 3.58e-01 95.1% 68.0%
5048570 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.54 32.0 3.26e-01 72.8% 58.7%
3995005 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.53 32.0 3.18e-01 71.6% 57.6%
5068038 11.1.1.249 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_9 0.53 37.0 3.43e-01 77.8% 58.0%
3907935 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 2.85e-01 74.1% 37.4%
3617588 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.52 31.0 3.01e-01 72.8% 51.6%
3485796 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 3.27e-01 74.1% 57.0%
3587268 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 33.0 2.91e-01 86.4% 43.3%
3214812 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.51 34.0 3.24e-01 87.7% 57.4%
3619258 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 3.83e-01 72.8% 100.0%
3801221 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.51 31.0 2.95e-01 72.8% 51.6%
3471299 11.1.1.876 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29962 0.50 35.0 3.31e-01 90.1% 61.1%