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NC_007623.1__YP_418149.1__PPEV_gp116__00116

Bact-Vir

NC_007623.1__YP_418149.1__PPEV_gp116__00116

Identity

Accession:
NC_007623 ↗
Kingdom:
phage

Quality

62.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 579-781
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.74 16.0 3.75e-01 96.1% 86.4%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 18.0 3.34e-01 89.7% 88.3%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 41.0 3.47e-01 89.7% 42.5%
5zc1D00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 30.0 4.04e-01 90.1% 100.0%
3pgbA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 31.0 4.02e-01 92.6% 94.8%
3wmyA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 45.0 3.97e-01 100.0% 57.9%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 29.0 3.40e-01 91.6% 72.1%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.53 37.0 3.28e-01 93.1% 47.5%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 30.0 3.45e-01 96.1% 73.8%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.52 26.0 3.40e-01 88.7% 85.0%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.95e-01 92.1% 80.3%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 47.0 4.06e-01 100.0% 74.0%
3ke6A02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 28.0 3.42e-01 75.9% 81.9%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.51 27.0 3.49e-01 87.2% 88.9%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 28.0 3.55e-01 89.7% 92.1%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.50 46.0 3.70e-01 98.5% 97.2%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.50 24.0 3.47e-01 77.3% 98.9%
1nycA00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.50 25.0 3.21e-01 87.7% 82.9%
1zldA00 2.60.40.1920 Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA 0.50 24.0 3.29e-01 99.5% 88.2%
4lmiB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 28.0 3.34e-01 96.1% 79.4%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4983588 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.68 23.0 3.68e-01 99.0% 78.7%
3884054 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.62 29.0 3.96e-01 97.5% 86.0%
3891004 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.60 31.0 4.20e-01 98.0% 100.0%
3199418 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.60 16.0 3.35e-01 97.5% 100.0%
5011833 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.59 24.0 3.21e-01 72.9% 68.6%
3780296 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.58 30.0 4.04e-01 89.7% 100.0%
3993569 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 44.0 3.70e-01 99.0% 49.7%
3288112 243.1.1.69 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6459 0.55 30.0 4.09e-01 95.6% 100.0%
3668721 101.1.12.0 alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.52 30.0 3.81e-01 95.6% 96.7%
D2 high residues 843-955
PDB
D3 medium residues 229-308
PDB
D4 medium residues 309-444
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.73 41.0 5.05e-01 79.4% 86.2%
1buqA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 45.0 4.66e-01 93.4% 76.0%
1c7hA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 43.0 4.47e-01 91.9% 74.8%
2kxgA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 37.0 4.27e-01 78.7% 83.2%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.61 45.0 4.69e-01 75.7% 91.9%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.60 44.0 4.04e-01 76.5% 80.6%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 44.0 4.47e-01 96.3% 77.6%
3dmcA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 41.0 4.20e-01 93.4% 73.1%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.80e-01 72.8% 67.6%
3fgyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 4.21e-01 82.4% 75.6%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.57 43.0 3.85e-01 77.9% 79.1%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 4.29e-01 82.4% 81.4%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 4.13e-01 91.9% 74.8%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 4.30e-01 84.6% 81.1%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 4.17e-01 89.7% 77.9%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 4.19e-01 91.9% 79.7%
2rckA01 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.56 41.0 3.57e-01 77.2% 75.2%
3dm8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 4.19e-01 86.8% 78.5%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 4.27e-01 100.0% 80.0%
1s5aB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 4.02e-01 83.8% 72.7%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 4.55e-01 82.4% 97.2%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 4.15e-01 88.2% 78.9%
3mg1B02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 3.96e-01 96.3% 78.4%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 4.19e-01 86.0% 88.6%
3e8tA00 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.54 39.0 3.43e-01 76.5% 75.0%
3eyrA00 3.15.10.40 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 0.53 39.0 3.67e-01 77.9% 62.1%
7f13A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 3.80e-01 80.9% 70.8%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.75e-01 75.7% 72.5%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.53 37.0 3.49e-01 91.2% 57.6%
2r4iA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 36.0 3.81e-01 89.7% 77.2%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 4.11e-01 80.9% 93.2%
1wnhA02 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 4.42e-01 84.6% 100.0%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 4.12e-01 78.7% 94.4%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.84e-01 79.4% 75.0%
4x2oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.60e-01 80.9% 89.9%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 4.26e-01 86.0% 96.9%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 4.01e-01 80.1% 100.0%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3930653 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.68 40.0 4.81e-01 77.9% 87.8%
4647627 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.67 50.0 4.24e-01 76.5% 66.5%
3530920 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.65 49.0 4.25e-01 77.9% 75.6%
2765234 243.3.1.12 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.65 43.0 4.94e-01 80.9% 92.8%
3425790 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.65 44.0 5.06e-01 80.9% 96.8%
6374 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.64 44.0 4.58e-01 92.6% 76.0%
None 0.64 44.0 4.55e-01 92.6% 76.0%
3385295 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 45.0 3.68e-01 86.8% 43.0%
3255279 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 43.0 2.98e-01 85.3% 22.3%
429242 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.61 43.0 4.42e-01 95.6% 76.4%
3569021 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.61 45.0 4.08e-01 76.5% 75.7%
4039776 243.3.1.48 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › GlfB_C 0.60 50.0 4.78e-01 89.7% 98.8%
3699994 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 45.0 4.60e-01 90.4% 79.3%
3606839 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 45.0 4.68e-01 91.2% 83.1%
3727055 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.59 45.0 4.45e-01 94.9% 75.9%
4937710 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.58 38.0 4.06e-01 89.7% 76.5%
3460348 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.58 38.0 3.70e-01 90.4% 58.1%
3734807 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 41.0 3.89e-01 88.2% 58.8%
3451025 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.58 39.0 4.50e-01 78.7% 94.0%
1688901 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.58 41.0 4.21e-01 91.9% 76.6%
4315252 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.58 44.0 4.39e-01 95.6% 75.9%
3300968 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 42.0 2.56e-01 74.3% 16.4%
4083856 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 3.19e-01 85.3% 27.3%
3808862 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.57 44.0 4.41e-01 80.1% 88.4%
399927 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.57 44.0 4.26e-01 95.6% 71.9%
3760087 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.57 46.0 3.98e-01 84.6% 78.5%
4020443 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.57 39.0 4.12e-01 90.4% 78.0%
4884000 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.56 41.0 3.93e-01 75.7% 100.0%
3828738 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.56 46.0 4.44e-01 88.2% 95.5%
4950139 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.56 39.0 4.08e-01 89.7% 77.6%
3818687 243.1.1.49 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 0.56 46.0 4.50e-01 94.1% 82.1%
None 0.55 41.0 4.34e-01 77.2% 93.3%
5003871 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.55 42.0 4.16e-01 91.2% 77.1%
3256136 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 43.0 4.11e-01 82.4% 71.6%
4608992 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.55 41.0 3.93e-01 78.7% 98.7%
3764436 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.55 46.0 4.25e-01 91.2% 84.0%
3281242 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.54 39.0 4.05e-01 91.9% 79.2%
3596331 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.54 41.0 4.28e-01 80.1% 91.4%
3970009 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 40.0 3.78e-01 77.9% 91.7%
4254866 243.1.1.66 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TcaA_5th 0.54 40.0 4.18e-01 77.9% 90.4%
3588483 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 44.0 4.44e-01 95.6% 88.1%
3736480 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 43.0 4.12e-01 92.6% 74.8%
137905 883.1.1.5 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › DUF1439 0.53 39.0 3.64e-01 77.9% 60.8%
4676601 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.53 40.0 3.72e-01 78.7% 94.7%
3953277 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.53 42.0 4.13e-01 100.0% 79.3%
3728062 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 40.0 4.01e-01 84.6% 78.6%
5059048 243.1.1.13 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD 0.52 36.0 3.79e-01 89.7% 78.0%
3222123 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 43.0 4.41e-01 89.7% 100.0%
3970236 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 39.0 3.91e-01 90.4% 75.5%
3773175 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.52 44.0 4.00e-01 91.9% 84.9%
135548 243.1.1.19 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3804 0.52 41.0 4.25e-01 85.3% 96.1%
3960457 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 41.0 4.00e-01 100.0% 75.5%
3974899 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.51 37.0 3.67e-01 90.4% 70.3%
3407993 243.1.1.40 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 0.51 40.0 3.67e-01 83.1% 86.7%
4152363 243.1.1.115 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29733 0.51 39.0 4.09e-01 80.1% 93.5%
None 0.51 44.0 4.54e-01 93.4% 100.0%
6385 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.51 38.0 4.01e-01 80.1% 100.0%
4582733 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.50 39.0 4.02e-01 86.0% 86.2%
D5 medium residues 513-570
PDB