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NC_007623.1__YP_418182.1__PPEV_gp149__00149

Bact-Vir

NC_007623.1__YP_418182.1__PPEV_gp149__00149

Identity

Accession:
NC_007623 ↗
Kingdom:
phage

Quality

68.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Elvirus› Pseudomonas_phage_EL

TaxID: 273133

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 187-291
PDB
Domain cluster: rep: MF063068.1__ARV77473.1__NOXIFER_308__00304__D149-240
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n40P04 2.60.40.2400 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain C 0.73 48.0 5.63e-01 86.7% 97.3%
3muuB02 2.60.40.2400 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain C 0.72 48.0 5.51e-01 85.7% 95.9%
4tw1B00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.69 62.0 4.52e-01 99.0% 92.6%
1lkfA00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.68 61.0 4.43e-01 100.0% 91.8%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 45.0 5.09e-01 86.7% 97.5%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.63 34.0 4.13e-01 97.1% 83.1%
4g5aA00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 47.0 4.82e-01 85.7% 82.8%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 50.0 5.08e-01 86.7% 95.2%
2lgnA00 2.60.40.2850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 38.0 4.66e-01 74.3% 100.0%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 31.0 3.67e-01 80.0% 70.4%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.61 33.0 4.09e-01 97.1% 93.0%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.60 51.0 3.48e-01 93.3% 82.5%
4f8lA00 2.60.40.3590 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 48.0 4.37e-01 84.8% 93.5%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.60 48.0 4.66e-01 86.7% 98.3%
6hyfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 47.0 4.74e-01 86.7% 84.0%
4lsdF00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 46.0 4.79e-01 88.6% 89.8%
6b9tF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 39.0 3.93e-01 87.6% 66.1%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 41.0 4.45e-01 88.6% 88.4%
4fumA01 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.58 39.0 4.58e-01 90.5% 97.3%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.58 44.0 3.79e-01 81.0% 60.3%
2l7eA00 2.60.40.1970 Mainly Beta › Sandwich › Immunoglobulin-like › YEATS domain 0.57 45.0 4.33e-01 85.7% 86.2%
1uijB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 48.0 4.20e-01 94.3% 98.8%
5utkA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 4.66e-01 90.5% 98.8%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 40.0 3.87e-01 91.4% 64.8%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 35.0 3.32e-01 82.9% 51.5%
4eq3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 4.43e-01 87.6% 95.4%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 4.47e-01 87.6% 97.8%
2ux6A00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.54 47.0 4.46e-01 94.3% 98.4%
1m4kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 4.49e-01 86.7% 94.9%
2vsdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 4.40e-01 85.7% 95.7%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 40.0 3.97e-01 100.0% 74.8%
4wy5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 37.0 2.63e-01 72.4% 55.9%
5fljA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 46.0 3.90e-01 99.0% 84.6%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 31.0 3.12e-01 99.0% 57.3%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 4.27e-01 98.1% 80.5%
4yrdA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 44.0 4.23e-01 97.1% 81.5%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 40.0 3.94e-01 100.0% 77.0%
2xg5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 4.25e-01 86.7% 96.7%
4avaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 33.0 3.00e-01 79.0% 47.2%
2cwrA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.77e-01 88.6% 82.5%
1q8mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.56e-01 78.1% 85.1%
5wl1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 4.01e-01 85.7% 93.1%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3190787 210.2.1.3 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C_2 0.65 56.0 4.03e-01 95.2% 91.1%
5030338 11.1.1.1410 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CarboxypepD_reg 0.65 49.0 5.34e-01 86.7% 97.6%
3172980 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.65 54.0 4.09e-01 93.3% 88.7%
4932116 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 52.0 5.30e-01 86.7% 92.0%
5030329 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 46.0 5.06e-01 88.6% 94.1%
5069832 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 46.0 5.04e-01 84.8% 94.1%
5056675 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 45.0 4.19e-01 86.7% 58.5%
4976957 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.63 47.0 3.86e-01 79.0% 73.6%
3282665 11.1.1.399 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PLipase_C_C 0.62 54.0 4.58e-01 95.2% 94.7%
4996561 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 46.0 5.07e-01 80.0% 100.0%
4940419 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.60 42.0 4.41e-01 85.7% 80.0%
3166528 109.4.1.1246 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ig_TRAPPC9-Trs120_3rd 0.60 48.0 4.09e-01 86.7% 91.4%
3184594 11.1.1.871 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26282 0.60 48.0 4.19e-01 86.7% 91.9%
3988650 3370.1.1.1 ↗ beta sandwiches › Lactococcin 972 › Lactococcin 972 › Lactococcin 972 › Lactococcin_972 0.60 41.0 4.69e-01 81.9% 100.0%
4014058 11.1.1.871 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26282 0.60 48.0 4.26e-01 86.7% 90.7%
4933989 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 41.0 4.11e-01 87.6% 69.1%
3742407 11.1.8.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Ctag/Cox11 (Pfam 04442) › PF26282 0.59 48.0 4.61e-01 87.6% 85.8%
4934279 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 39.0 4.49e-01 83.8% 100.0%
2780879 1172.1.1.1 ↗ beta barrels › UL131A-like › UL130 C-terminal domain › UL130 C-terminal domain › Gp_UL130 0.59 35.0 3.48e-01 96.2% 55.9%
5055294 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.58 43.0 4.69e-01 88.6% 96.5%
5058028 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 44.0 4.73e-01 87.6% 95.6%
3226630 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.57 48.0 4.23e-01 92.4% 81.9%
4970102 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.57 43.0 4.61e-01 98.1% 91.1%
4934545 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 45.0 4.52e-01 86.7% 97.3%
3238005 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 46.0 3.91e-01 87.6% 99.4%
3385295 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 41.0 3.20e-01 99.0% 34.5%
3218749 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.56 27.0 3.37e-01 79.0% 75.0%
3794791 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.56 47.0 4.08e-01 93.3% 86.1%
3628180 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.55 48.0 4.28e-01 97.1% 85.2%
5029096 10.12.1.100 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Polysacc_synt_C 0.54 43.0 4.04e-01 87.6% 95.6%
3987995 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 35.0 4.12e-01 75.2% 100.0%
5076111 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.54 38.0 4.12e-01 76.2% 86.7%
4984424 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.54 46.0 3.07e-01 92.4% 83.8%
3940428 5090.1.1.8 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.53 42.0 2.87e-01 84.8% 91.1%
5017990 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 47.0 4.64e-01 99.0% 97.3%
3919493 10.32.1.234 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PGAP1_3rd 0.53 45.0 4.03e-01 92.4% 79.3%
3846431 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.52 41.0 4.20e-01 86.7% 90.0%
3598427 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 36.0 3.33e-01 82.9% 54.3%
4031118 10.12.1.100 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Polysacc_synt_C 0.52 44.0 4.23e-01 97.1% 81.5%
5038627 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.51 44.0 3.16e-01 97.1% 75.7%
D2 medium residues 46-105
PDB
D3 medium residues 106-184
PDB