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NC_007623.1__YP_418205.1__PPEV_gp172__00172

Bact-Vir

NC_007623.1__YP_418205.1__PPEV_gp172__00172

Identity

Accession:
NC_007623 ↗
Kingdom:
phage

Quality

83.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Elvirus› Pseudomonas_phage_EL

TaxID: 273133

Cluster

View cluster (15 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 72-273
PDB
Domain cluster: rep: term6_stool_scaffold_5_prodigal-single.1__X__X__00078__D107-302
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.71 29.0 4.69e-01 85.1% 97.6%
1jvmB00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 32.0 4.55e-01 84.2% 100.0%
1g8xA06 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 38.0 3.27e-01 72.8% 38.2%
2d1lA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.61 34.0 3.20e-01 99.0% 43.8%
7aalA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.60 33.0 3.03e-01 100.0% 40.2%
4wpeA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.60 35.0 3.17e-01 98.5% 41.8%
2y44A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.60 32.0 3.38e-01 99.0% 54.9%
4wpcA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.59 33.0 2.94e-01 98.5% 37.5%
2xq9A02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.59 28.0 3.52e-01 70.3% 72.7%
2v0oB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.58 31.0 2.86e-01 99.0% 38.7%
2z73B01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 53.0 4.41e-01 99.5% 82.4%
3qweA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.57 34.0 3.10e-01 98.5% 43.5%
4nx9A01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.56 42.0 4.74e-01 99.0% 100.0%
2j1dG01 1.20.58.2220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain 0.56 40.0 3.22e-01 70.3% 66.7%
6xj1A01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.56 34.0 3.18e-01 100.0% 49.0%
3e6sA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 33.0 3.68e-01 80.2% 73.6%
1tjoB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 34.0 3.63e-01 88.6% 70.3%
4p9tA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.54 31.0 4.05e-01 76.2% 97.5%
4cybD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 32.0 3.48e-01 89.1% 69.0%
1nfvA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 31.0 3.41e-01 96.5% 66.3%
6bl6B01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.53 41.0 3.54e-01 80.2% 92.7%
2xtzA02 1.10.400.10 Mainly Alpha › Orthogonal Bundle › GI Alpha 1, domain 2-like › GI Alpha 1, domain 2-like 0.52 31.0 3.73e-01 86.6% 90.5%
2clbA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 31.0 3.50e-01 96.0% 74.2%
3jyhA02 1.20.120.980 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Serine carboxypeptidase S28, SKS domain 0.52 22.0 2.55e-01 98.5% 51.7%
1w36B02 1.10.3170.10 Mainly Alpha › Orthogonal Bundle › Recbcd, chain B, domain 2 › Recbcd, chain B, domain 2 0.52 34.0 3.60e-01 95.0% 73.7%
4k0dA00 1.20.120.1730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 34.0 4.02e-01 86.6% 95.1%
4xvxA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 36.0 4.15e-01 84.7% 98.6%
5z7qA00 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.51 40.0 4.26e-01 87.1% 92.6%
6xkyA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.51 44.0 4.63e-01 99.0% 98.9%
2pg0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.50 36.0 4.15e-01 85.1% 100.0%
3p4tA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.50 36.0 4.14e-01 85.1% 100.0%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.50 31.0 3.85e-01 75.2% 100.0%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3699458 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.67 38.0 3.40e-01 99.0% 39.3%
3206973 601.2.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr 0.67 38.0 4.59e-01 99.5% 83.0%
4979114 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.66 30.0 3.81e-01 99.0% 69.6%
3746563 3755.3.1.123 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Tektin 0.66 35.0 4.07e-01 100.0% 69.3%
3764867 601.2.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr 0.64 36.0 4.40e-01 97.5% 83.0%
3972329 633.5.1.0 ↗ alpha bundles › Bromodomain-like › LemA-like › LemA-like 0.63 46.0 5.03e-01 100.0% 90.9%
3585262 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.61 36.0 2.95e-01 100.0% 31.0%
3430042 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 40.0 3.52e-01 86.1% 43.3%
3923557 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.58 34.0 3.43e-01 100.0% 56.0%
3944917 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.58 39.0 3.77e-01 97.5% 60.4%
3962991 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.57 37.0 3.82e-01 100.0% 67.2%
5005724 3755.3.1.637 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.54 41.0 3.96e-01 100.0% 68.1%
4036645 5086.1.1.92 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE 0.54 37.0 3.82e-01 100.0% 71.8%
2462955 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.54 42.0 3.58e-01 80.2% 91.0%
5030728 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 37.0 4.33e-01 93.1% 100.0%
3506533 3684.1.1.0 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.53 36.0 3.90e-01 72.8% 79.4%
3246577 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 43.0 4.44e-01 94.6% 90.8%
4963586 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.52 32.0 3.90e-01 81.2% 94.6%
3885988 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.52 39.0 4.12e-01 79.2% 99.5%
4024003 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.51 36.0 4.17e-01 91.6% 100.0%
3544151 603.2.1.0 ↗ alpha bundles › STAT-like › STAT › STAT 0.51 31.0 3.28e-01 100.0% 66.7%
3812703 3758.1.1.7 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › BPS1 0.50 42.0 4.13e-01 88.6% 99.6%
4968577 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.50 33.0 3.13e-01 85.6% 55.0%
3273600 601.20.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipophorin-III › Apolipophorin-III 0.50 35.0 3.41e-01 84.7% 62.7%