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NC_007637.1__YP_424978.1__PK1Ep12__00012

Bact-Vir

NC_007637.1__YP_424978.1__PK1Ep12__00012

Identity

Accession:
NC_007637 ↗
Kingdom:
phage

Quality

71.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autosignataviridae› Vectrevirus› Escherichia_phage_K1E

TaxID: 2679891

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-63
PDB
Domain cluster: rep: MG592537.1__AUR92233.1__NVP1170O_120__00120__D5-77
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.69 45.0 4.57e-01 73.3% 67.2%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.66 39.0 3.50e-01 73.3% 40.7%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.66 41.0 3.30e-01 73.3% 30.9%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.65 43.0 4.73e-01 73.3% 91.3%
3nyiA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.63 56.0 4.30e-01 100.0% 46.7%
2knrA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.63 53.0 4.32e-01 100.0% 49.2%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 52.0 4.85e-01 96.7% 73.7%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.62 39.0 3.49e-01 85.0% 45.8%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 40.0 3.82e-01 95.0% 56.9%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 48.0 2.90e-01 91.7% 20.8%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.60 45.0 3.64e-01 80.0% 82.3%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.59 40.0 3.40e-01 73.3% 41.2%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 49.0 3.13e-01 96.7% 26.9%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 46.0 4.35e-01 100.0% 72.0%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.58 51.0 3.66e-01 100.0% 59.3%
3luqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 39.0 3.20e-01 71.7% 36.8%
2laeA00 3.30.310.170 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC 0.57 50.0 4.04e-01 100.0% 96.6%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 46.0 3.02e-01 98.3% 19.6%
3ga4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 47.0 3.61e-01 100.0% 73.1%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 44.0 2.68e-01 86.7% 13.6%
4xchA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.56 46.0 3.59e-01 100.0% 83.9%
7obmA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 41.0 2.70e-01 80.0% 27.2%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 39.0 2.88e-01 76.7% 68.6%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 40.0 4.20e-01 95.0% 85.5%
3uimA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 38.0 3.37e-01 73.3% 67.4%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.55 45.0 3.61e-01 98.3% 43.7%
1a9xA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 44.0 3.04e-01 91.7% 72.8%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 36.0 2.89e-01 78.3% 30.8%
1j6wA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.55 44.0 3.44e-01 100.0% 80.1%
1st8A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 46.0 3.33e-01 100.0% 55.8%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.54 40.0 3.17e-01 100.0% 36.5%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 42.0 3.49e-01 88.3% 46.5%
1y7bA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 44.0 2.80e-01 100.0% 17.8%
6nobA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 45.0 2.80e-01 100.0% 58.4%
3azoA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 41.0 2.73e-01 98.3% 19.1%
4x00A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 40.0 2.57e-01 83.3% 65.2%
4l68A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 37.0 3.01e-01 75.0% 57.3%
3h04A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 39.0 2.62e-01 100.0% 19.1%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 32.0 3.35e-01 93.3% 71.7%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.50 43.0 3.06e-01 96.7% 79.0%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 37.0 3.32e-01 96.7% 54.4%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3484705 220.1.1.61 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.76 68.0 5.16e-01 100.0% 42.9%
3473111 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.75 67.0 3.96e-01 100.0% 12.5%
5034195 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.72 49.0 5.18e-01 81.7% 78.2%
3203216 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.70 48.0 3.75e-01 73.3% 32.4%
3935989 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 52.0 3.22e-01 85.0% 23.0%
3856806 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 54.0 3.12e-01 88.3% 17.5%
4153293 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.67 46.0 3.69e-01 71.7% 53.3%
3920627 192.18.1.0 ↗ alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like 0.67 58.0 3.40e-01 100.0% 14.2%
3599937 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 56.0 4.81e-01 100.0% 66.0%
3924546 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.65 47.0 3.67e-01 100.0% 35.4%
3704402 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 55.0 4.56e-01 100.0% 55.7%
4012221 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 55.0 4.40e-01 100.0% 49.2%
3676745 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.64 56.0 4.30e-01 100.0% 47.9%
4002681 377.1.2.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger 0.63 45.0 4.10e-01 100.0% 53.3%
3520574 5.1.2.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DPPIV_N 0.63 45.0 3.12e-01 78.3% 37.3%
3925547 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.63 54.0 3.82e-01 98.3% 32.3%
3193241 223.2.1.22 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin 0.62 51.0 4.06e-01 100.0% 43.8%
3475995 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 47.0 4.53e-01 85.0% 100.0%
3685401 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.61 44.0 2.85e-01 90.0% 15.7%
3583641 2002.1.1.45 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd 0.61 53.0 3.48e-01 96.7% 26.1%
3200774 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 50.0 2.94e-01 90.0% 26.7%
4002138 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.61 45.0 2.97e-01 80.0% 83.1%
5002376 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 50.0 4.19e-01 91.7% 71.4%
None — 0.60 53.0 3.03e-01 100.0% 26.6%
3783013 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 52.0 3.30e-01 98.3% 23.1%
4012098 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 44.0 2.64e-01 100.0% 9.8%
3701091 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 50.0 3.80e-01 100.0% 40.0%
3552839 11.1.1.795 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FANCAA 0.59 41.0 3.37e-01 73.3% 94.5%
3443030 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 49.0 4.60e-01 100.0% 77.5%
5055184 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 45.0 4.15e-01 100.0% 64.7%
3463916 1.1.1.20 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N 0.58 40.0 2.58e-01 71.7% 17.1%
3670690 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 51.0 3.14e-01 100.0% 43.5%
5042375 2.26.1.1 ↗ beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.58 49.0 4.60e-01 98.3% 94.7%
3864913 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.57 48.0 3.70e-01 100.0% 50.3%
3179646 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 2.83e-01 95.0% 27.7%
4587154 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.57 37.0 2.79e-01 71.7% 26.0%
3658408 4325.1.1.13 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 0.57 47.0 4.46e-01 100.0% 85.3%
3445028 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 47.0 4.40e-01 100.0% 87.5%
3420926 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 49.0 3.02e-01 100.0% 18.9%
3631248 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.55 47.0 3.82e-01 100.0% 52.8%
3348571 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 44.0 3.21e-01 90.0% 72.8%
3208301 66.1.1.3 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox 0.55 44.0 3.63e-01 95.0% 63.3%
3497521 2.3.1.0 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like 0.54 46.0 3.69e-01 100.0% 77.7%
3858437 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.54 37.0 2.68e-01 71.7% 24.1%
3652231 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.54 47.0 3.06e-01 100.0% 32.4%
3501743 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.51 35.0 3.09e-01 71.7% 100.0%
3691681 2.1.1.25 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.51 41.0 3.42e-01 100.0% 80.0%
3712922 7026.1.1.0 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.51 43.0 2.83e-01 100.0% 33.4%
3497113 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 41.0 3.21e-01 100.0% 71.2%
5062718 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 32.0 3.59e-01 73.3% 97.5%
3490245 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 39.0 3.58e-01 93.3% 84.4%
3799327 223.1.1.101 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30734 0.50 41.0 2.56e-01 93.3% 41.0%
3616958 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.50 43.0 3.32e-01 100.0% 46.2%
5003610 3153.1.1.0 ↗ a+b two layers › PipX › PipX › PipX 0.50 39.0 3.46e-01 90.0% 56.8%