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NC_007804.2__YP_512306.2PhiV10p5100051

Bact-Vir

NC_007804.2__YP_512306.2__PhiV10p51__00051

Identity

Accession:: NC_007804 ↗
Kingdom:: phage

Quality

77.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Uetakevirus› Escherichia_phage_phiV10

TaxID: 343516

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-88

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1emsA01	3.60.110.10	Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase	0.63	44.0	3.10e-01	72.6%	44.3%
3jb9L00	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.56	45.0	3.08e-01	86.9%	61.4%
3agdA01	3.40.710.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily	0.55	42.0	2.91e-01	82.1%	36.2%
8f5pC01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.55	42.0	2.90e-01	82.1%	52.9%
3lhxA00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.53	43.0	3.02e-01	90.5%	49.3%
7vtgA01	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.53	40.0	2.83e-01	82.1%	35.4%
4fr9A00	3.10.450.360	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.53	39.0	3.41e-01	81.0%	87.9%
5h8iI00	3.60.110.10	Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase	0.53	39.0	2.81e-01	82.1%	53.2%
3fvzA00	2.120.10.30	Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain	0.52	43.0	2.92e-01	92.9%	53.5%
2j0nB00	1.20.1710.10	Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like	0.51	39.0	3.09e-01	84.5%	85.6%
1kngA00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.51	34.0	2.91e-01	70.2%	77.8%
3f42A00	3.30.1310.10	Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain	0.50	36.0	3.48e-01	73.8%	78.5%
1q67A01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.50	36.0	3.05e-01	75.0%	53.6%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5051523	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.62	42.0	3.78e-01	71.4%	67.5%
4936370	2485.1.1.37 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2	0.59	45.0	3.93e-01	83.3%	88.5%
3245227	5.1.4.6 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40	0.58	44.0	3.03e-01	83.3%	57.8%
4989085	2485.1.1.37 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2	0.57	40.0	3.62e-01	73.8%	87.0%
4118829	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.55	40.0	3.33e-01	82.1%	45.0%
3701985	2004.1.1.427 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N	0.54	41.0	2.60e-01	82.1%	82.2%
4943121	5.1.5.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed	0.52	40.0	2.57e-01	83.3%	39.3%
4025655	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.52	37.0	3.57e-01	82.1%	66.3%
5042381	2004.1.1.198 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23	0.50	37.0	2.48e-01	79.8%	25.6%