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NC_007805.1__YP_001293390.1__PPF10_gp046__00046

Bact-Vir

NC_007805.1__YP_001293390.1__PPF10_gp046__00046

Identity

Accession:
NC_007805 ↗
Kingdom:
phage

Quality

82.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_F10

TaxID: 347324

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-97
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h1nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.79 65.0 5.30e-01 87.1% 64.2%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.79 58.0 6.13e-01 84.3% 88.7%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.77 67.0 5.72e-01 100.0% 60.7%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.77 61.0 6.45e-01 91.4% 100.0%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.76 59.0 5.93e-01 100.0% 83.1%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.75 65.0 5.69e-01 100.0% 64.2%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.75 59.0 5.49e-01 100.0% 67.8%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 60.0 6.25e-01 97.1% 100.0%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 61.0 6.28e-01 94.3% 97.0%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 62.0 6.23e-01 100.0% 91.5%
4kzsA02 6.10.140.1870 Special › Helix non-globular › Helix Hairpins › 0.74 55.0 5.53e-01 88.6% 80.0%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.74 57.0 5.56e-01 88.6% 76.3%
3ctwB00 1.10.8.930 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Protein of unknown function DUF1465 0.73 62.0 5.14e-01 92.9% 93.3%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.72 58.0 5.86e-01 100.0% 88.7%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 62.0 6.00e-01 100.0% 92.6%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 60.0 5.90e-01 97.1% 88.2%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 52.0 5.51e-01 92.9% 98.3%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 56.0 5.68e-01 92.9% 91.2%
5dn6J00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.70 52.0 5.15e-01 80.0% 100.0%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.69 60.0 5.63e-01 100.0% 93.1%
6cgaC02 1.20.58.860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 52.0 5.11e-01 100.0% 76.9%
2oauA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 48.0 4.22e-01 78.6% 51.0%
2ke4A00 6.10.140.470 Special › Helix non-globular › Helix Hairpins › 0.67 59.0 5.33e-01 100.0% 71.4%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.67 58.0 5.18e-01 100.0% 71.6%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.67 54.0 5.01e-01 90.0% 68.1%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.67 53.0 5.29e-01 90.0% 87.7%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.67 53.0 5.37e-01 92.9% 91.2%
1bdp002 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.66 56.0 4.96e-01 98.6% 92.7%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.66 50.0 4.86e-01 87.1% 74.7%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.65 49.0 5.28e-01 85.7% 100.0%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.65 53.0 4.53e-01 91.4% 74.4%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.65 50.0 5.14e-01 87.1% 92.6%
1e7uA05 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.65 46.0 3.33e-01 74.3% 37.2%
7jiuA03 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.63 51.0 4.13e-01 88.6% 46.3%
1u3dA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 45.0 3.67e-01 84.3% 39.6%
3e22A03 1.10.287.600 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 45.0 4.93e-01 80.0% 100.0%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.62 44.0 3.74e-01 77.1% 42.7%
3g80A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 52.0 5.15e-01 100.0% 100.0%
3r0qA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.59 51.0 3.71e-01 98.6% 74.0%
2kg7B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.58 49.0 4.40e-01 98.6% 68.0%
4m52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 3.10e-01 98.6% 91.0%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3924651 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.79 64.0 5.76e-01 97.1% 65.3%
3591419 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.76 64.0 5.53e-01 91.4% 63.8%
3166880 906.1.1.0 ↗ few secondary structure elements › CCCH zinc finger › CCCH zinc finger › CCCH zinc finger 0.76 64.0 6.50e-01 100.0% 95.7%
3489720 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.73 65.0 5.62e-01 100.0% 66.4%
3581264 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.72 61.0 5.11e-01 100.0% 55.0%
4240705 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.72 53.0 4.99e-01 82.9% 64.7%
3395724 605.1.1.115 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF2368 0.72 58.0 4.79e-01 87.1% 50.8%
3798426 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.71 55.0 5.54e-01 90.0% 84.3%
3174647 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.71 59.0 5.96e-01 97.1% 92.9%
3246869 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.70 61.0 4.24e-01 100.0% 29.2%
3277724 150.5.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.70 60.0 5.52e-01 100.0% 81.1%
3577228 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 60.0 5.17e-01 100.0% 60.9%
3392896 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.68 45.0 4.31e-01 78.6% 56.5%
154974 150.5.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.67 57.0 5.61e-01 98.6% 88.3%
3404085 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.67 56.0 5.56e-01 95.7% 93.3%
5049641 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.67 52.0 5.16e-01 95.7% 81.3%
3864054 192.10.1.0 ↗ alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.67 58.0 4.89e-01 100.0% 56.0%
3571718 3476.1.1.2 ↗ alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › PF26116 0.66 58.0 5.58e-01 100.0% 87.5%
3641196 5041.1.1.27 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › PRA1 0.66 54.0 4.65e-01 91.4% 56.5%
4958384 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.65 49.0 4.55e-01 88.6% 63.3%
3588718 633.19.1.0 ↗ alpha bundles › Bromodomain-like › Hypothetical protein lpg2422 helical bundle domain › Hypothetical protein lpg2422 helical bundle domain 0.62 44.0 4.36e-01 80.0% 72.0%
5074223 622.5.1.0 ↗ alpha bundles › YvfG-like › Probable 26S proteasome regulatory subunit p27 › Probable 26S proteasome regulatory subunit p27 0.60 51.0 4.82e-01 100.0% 88.9%
3594428 301.6.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like 0.57 48.0 3.53e-01 97.1% 69.0%