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NC_007805.1__YP_001293393.1__PPF10_gp049__00049

Bact-Vir

Identity

Accession:: NC_007805 ↗
Kingdom:: phage

Quality

80.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_F10

TaxID: 347324

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 143-231

PDB

Domain cluster: rep: KU695582.1__AMQ66906.1__PBI_MCFLY_72__00069__D5-82

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1dw9A02	3.30.1160.10	Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain	0.56	32.0	3.53e-01	95.5%	70.6%
6j09A02	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.56	31.0	3.31e-01	100.0%	59.0%
5yrzB00	3.30.920.30	Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein.	0.54	34.0	4.08e-01	98.9%	98.3%
3l9fA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	44.0	4.45e-01	97.8%	88.8%
2nyxB01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	37.0	3.20e-01	73.0%	53.5%
4iy0A00	3.10.580.10	Alpha Beta › Roll › CBS-domain › CBS-domain	0.51	42.0	3.55e-01	91.0%	84.2%
4n1vA00	4.10.520.10	Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins	0.50	35.0	3.46e-01	71.9%	100.0%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4033072	101.1.9.32 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT	0.77	66.0	6.81e-01	100.0%	97.6%
3588288	101.1.9.32 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT	0.76	66.0	5.51e-01	100.0%	56.0%
4595166	5076.2.1.0 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ	0.68	39.0	2.86e-01	76.4%	22.2%
5066984	101.1.2.110 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_IclR	0.59	40.0	4.22e-01	98.9%	77.5%
3229557	3937.1.1.2 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin	0.57	38.0	2.48e-01	98.9%	15.6%
3225873	3937.1.1.2 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin	0.57	39.0	2.59e-01	98.9%	17.0%
4032453	101.1.9.78 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › AntA	0.55	44.0	4.35e-01	100.0%	82.1%
3983446	101.1.2.84 ↗	alpha arrays › HTH › HTH › winged helix domain › CaiF_GrlA	0.55	38.0	3.68e-01	92.1%	63.0%
4262649	812.2.1.1 ↗	a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain › Cyanate_lyase	0.55	32.0	3.34e-01	96.6%	61.3%
3479321	5001.1.1.41 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw	0.53	40.0	2.75e-01	85.4%	90.4%
3794338	331.1.1.0 ↗	a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like	0.51	41.0	4.20e-01	98.9%	92.9%
3483770	101.1.2.271 ↗	alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC	0.51	37.0	3.08e-01	76.4%	96.4%
5049926	810.1.1.2 ↗	a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT	0.51	36.0	3.39e-01	74.2%	92.0%

D2 medium residues 13-97

PDB

Domain cluster: rep: OQ927986.1__WIF21984.1__X__00031__D13-77

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF09669.16 best	Phage_pRha	41.8	1.70e-10	94.1%	98.9%