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NC_007902.1__YP_516206.1__SGPHI_0028__00028

Bact-Vir

NC_007902.1__YP_516206.1__SGPHI_0028__00028

Identity

Accession:
NC_007902 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sodalis_phage_phiSG1

TaxID: 373126

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-244
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.78 43.0 5.30e-01 84.5% 82.8%
1y4wA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.74 48.0 5.38e-01 84.5% 82.1%
3vv1A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.72 44.0 5.18e-01 84.5% 86.5%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.72 45.0 5.34e-01 84.5% 90.6%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.72 50.0 5.09e-01 84.5% 72.4%
1umzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 53.0 4.81e-01 85.0% 59.9%
3zxfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 43.0 5.17e-01 82.0% 92.6%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.69 51.0 5.23e-01 85.9% 78.4%
2wjsA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 53.0 5.58e-01 99.5% 90.2%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 52.0 5.48e-01 100.0% 89.6%
2uwaA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 53.0 4.80e-01 85.0% 63.5%
1pz7A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 50.0 5.27e-01 99.5% 87.2%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 50.0 5.38e-01 99.5% 93.1%
7vcoA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.64 45.0 5.14e-01 83.5% 96.0%
6nu8A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.64 42.0 4.97e-01 85.0% 95.1%
2durB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 51.0 4.91e-01 84.0% 74.2%
1ux6A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 49.0 4.97e-01 84.5% 80.8%
1fx5B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 50.0 4.79e-01 83.5% 97.5%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 50.0 5.10e-01 85.0% 100.0%
5jozB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 49.0 5.07e-01 84.5% 100.0%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 49.0 4.98e-01 84.5% 100.0%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 49.0 5.08e-01 84.5% 99.0%
8a7dC01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 54.0 5.31e-01 98.5% 91.7%
2d44A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 45.0 3.86e-01 84.5% 51.6%
4aefA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 26.0 3.81e-01 84.0% 94.7%
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.57 30.0 3.85e-01 76.2% 89.5%
7uwjC01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.55 26.0 3.20e-01 96.6% 68.6%
5t89X05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 26.0 3.40e-01 85.0% 87.3%
5k3xA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 25.0 3.22e-01 98.5% 81.4%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3417166 10.1.1.34 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF3472 0.81 76.0 7.40e-01 99.0% 94.2%
4027391 10.1.1.114 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF29973 0.78 40.0 5.55e-01 97.6% 97.1%
4991389 10.1.1.117 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.78 74.0 6.65e-01 100.0% 87.2%
4992294 10.1.1.117 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.77 73.0 6.81e-01 100.0% 90.4%
4519672 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.75 45.0 5.38e-01 84.5% 87.1%
4210253 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.75 47.0 5.25e-01 84.0% 78.2%
4939191 10.1.1.64 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF2341 0.74 49.0 4.30e-01 84.0% 46.9%
4927060 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.74 52.0 6.12e-01 77.7% 99.3%
3310516 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.71 51.0 5.13e-01 85.0% 71.9%
3328172 10.1.1.12 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16,XET_C 0.70 53.0 4.74e-01 85.0% 57.1%
3660933 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.69 51.0 5.18e-01 85.0% 76.1%
3811267 10.1.1.58 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin 0.68 63.0 5.94e-01 100.0% 93.1%
3281522 10.1.1.16 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Peptidase_A4 0.68 59.0 5.98e-01 99.0% 92.7%
135303 10.1.1.1 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.67 53.0 5.54e-01 99.0% 89.2%
3831578 10.1.1.58 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin 0.66 62.0 5.21e-01 100.0% 66.0%
4026443 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.65 43.0 4.91e-01 95.6% 87.7%
4030284 10.1.1.19 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_leg-like 0.64 52.0 4.80e-01 84.5% 94.2%
4191746 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.63 52.0 5.35e-01 99.5% 89.0%
2576298 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.63 42.0 4.86e-01 84.5% 92.6%
4029701 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.63 48.0 4.59e-01 97.1% 68.5%
3729278 10.1.1.41 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.62 50.0 5.24e-01 83.0% 100.0%
2320976 10.1.1.41 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.61 50.0 5.09e-01 84.5% 100.0%
1870982 10.1.1.41 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.61 50.0 5.09e-01 85.0% 100.0%
3697843 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.60 56.0 5.11e-01 100.0% 88.7%
3865581 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 48.0 4.69e-01 98.5% 78.2%
3589313 10.1.1.41 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.59 48.0 4.88e-01 85.0% 99.5%
3261490 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 48.0 4.90e-01 84.5% 98.0%
4029923 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 47.0 4.59e-01 84.5% 94.7%
5060776 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.58 27.0 3.63e-01 86.9% 82.9%
3915600 109.4.1.109 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.58 51.0 3.25e-01 93.2% 36.1%
3190424 10.1.1.49 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_59_C 0.58 47.0 5.02e-01 84.5% 100.0%
4024468 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 47.0 4.80e-01 85.4% 99.5%
4027822 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 43.0 4.36e-01 96.6% 77.6%
4027944 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 46.0 4.59e-01 85.0% 95.7%
5067900 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.56 26.0 3.61e-01 86.4% 88.0%
2491351 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 51.0 4.88e-01 98.5% 94.6%
3409138 222.1.1.35 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas, MFE-2_hydrat-2_N 0.55 34.0 3.00e-01 81.6% 42.3%
5067933 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.55 26.0 3.39e-01 87.4% 81.9%
3794791 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.54 40.0 4.48e-01 82.5% 96.4%
5068789 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 24.0 3.22e-01 84.5% 85.0%