←Back to structures

NC_007902.1__YP_516208.1__SGPHI_0030__00030

Bact-Vir

NC_007902.1__YP_516208.1__SGPHI_0030__00030

Identity

Accession:
NC_007902 ↗
Kingdom:
phage

Quality

76.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sodalis_phage_phiSG1

TaxID: 373126

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-114
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04352.19 best ProQ 51.5 1.20e-13 100.0% 63.6%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mw6B00 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.91 78.0 7.01e-01 97.3% 69.1%
1dvoA00 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.91 85.0 6.52e-01 100.0% 48.0%
7rgsA01 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.88 81.0 7.23e-01 97.3% 73.5%
6s10A01 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.78 69.0 6.14e-01 97.3% 70.6%
3hdeC00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.64 45.0 3.52e-01 74.0% 90.2%
4nxtA01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.62 52.0 4.30e-01 100.0% 80.0%
6w9rB01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.58 42.0 3.39e-01 95.9% 37.1%
3n2xA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 46.0 3.18e-01 98.6% 85.2%
2jiiA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 41.0 3.13e-01 86.3% 91.0%
1yqzA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 36.0 3.25e-01 74.0% 80.6%
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.51 32.0 2.90e-01 93.2% 44.7%
1kblA02 1.10.189.10 Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2 0.51 33.0 3.54e-01 71.2% 77.8%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945492 505.1.1.1 ↗ alpha arrays › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › ProQ 0.93 88.0 7.39e-01 100.0% 63.5%
3970934 505.1.1.1 ↗ alpha arrays › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › ProQ 0.93 86.0 7.32e-01 100.0% 64.5%
4044177 505.1.1.1 ↗ alpha arrays › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › ProQ 0.93 87.0 6.97e-01 100.0% 55.4%
3220 505.1.1.2 ↗ alpha arrays › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › ProQ,FinO_N 0.91 85.0 6.52e-01 100.0% 48.0%
119496 505.1.1.1 ↗ alpha arrays › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › ProQ 0.90 78.0 6.40e-01 97.3% 54.9%
3000491 505.1.1.1 ↗ alpha arrays › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › ProQ 0.89 82.0 6.74e-01 98.6% 59.3%
2634135 505.1.1.1 ↗ alpha arrays › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › ProQ 0.78 70.0 5.91e-01 100.0% 60.7%
4464635 604.12.1.16 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › SFXNs 0.65 35.0 2.49e-01 93.2% 17.3%
3588649 3696.1.1.4 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › SNF2_assoc 0.59 39.0 3.76e-01 100.0% 57.6%
5054341 103.6.1.1 ↗ alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain › FGAR-AT_linker 0.59 41.0 3.93e-01 86.3% 62.4%
3427551 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.07e-01 90.4% 76.4%
3611653 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 39.0 3.40e-01 71.2% 87.0%
4300905 4018.1.1.1 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.57 42.0 3.21e-01 80.8% 94.2%
3532393 5050.1.1.6 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.57 42.0 2.81e-01 78.1% 39.9%
3785380 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.56 48.0 3.06e-01 100.0% 52.0%
3431121 5050.1.1.58 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C 0.55 48.0 3.38e-01 100.0% 83.6%
3920955 5050.1.1.6 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.54 41.0 2.96e-01 83.6% 99.2%
3682237 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.54 45.0 4.01e-01 91.8% 94.2%
5022956 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.53 42.0 3.08e-01 89.0% 47.9%
3607702 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.53 37.0 4.10e-01 91.8% 98.2%
3606213 109.4.1.21 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ENTH 0.51 42.0 3.42e-01 95.9% 89.7%
3598062 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 43.0 3.53e-01 100.0% 85.3%
4155214 621.1.1.3 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB 0.51 43.0 2.76e-01 95.9% 44.2%
3573843 3291.1.1.95 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Nas2_N 0.50 29.0 2.42e-01 98.6% 29.3%
3371398 5050.1.1.2 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 0.50 39.0 2.95e-01 89.0% 87.8%