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YP_529518.1

Arc-Vir

NC_007914__YP_529518.1__His1V-gp06__00006

Identity

Accession:
NC_007914 ↗
Protein ID:
YP_529518.1 ↗
Kingdom:
archaea

Quality

83.7 mean pLDDT

Taxonomy

TaxID: 128708

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-29
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.79 42.0 2.54e-01 82.8% 8.2%
2h84A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.73 40.0 2.55e-01 96.6% 10.8%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 44.0 3.12e-01 100.0% 19.5%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 45.0 3.29e-01 100.0% 24.0%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.71 54.0 3.81e-01 100.0% 25.7%
5ucoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.65 36.0 2.32e-01 96.6% 10.5%
1g8mA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.65 50.0 3.12e-01 100.0% 14.8%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.64 45.0 3.01e-01 100.0% 19.8%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 47.0 3.43e-01 100.0% 27.9%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 44.0 3.10e-01 100.0% 20.4%
4c4aA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.64 45.0 2.83e-01 72.4% 11.3%
1mhyD00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.63 46.0 2.53e-01 79.3% 38.8%
2jl8102 3.30.160.850 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 45.0 4.06e-01 86.2% 48.9%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 48.0 3.70e-01 100.0% 69.6%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 3.47e-01 96.6% 70.0%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 48.0 3.12e-01 100.0% 18.6%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.62 47.0 2.72e-01 100.0% 11.7%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 3.63e-01 96.6% 79.0%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.35e-01 96.6% 67.8%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 3.51e-01 100.0% 61.0%
1tedA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.59 43.0 2.78e-01 75.9% 59.7%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.59 43.0 3.67e-01 86.2% 41.8%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 3.54e-01 100.0% 69.4%
2dy1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 48.0 2.80e-01 100.0% 13.1%
4ijdA02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.58 42.0 4.18e-01 100.0% 74.2%
3ejkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 45.0 2.97e-01 100.0% 61.1%
2kqrA01 3.30.1910.20 Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain 0.58 41.0 3.42e-01 100.0% 39.2%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 3.09e-01 96.6% 56.2%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 3.33e-01 93.1% 71.0%
4dnhA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 43.0 2.49e-01 100.0% 97.6%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.58 40.0 3.43e-01 100.0% 62.0%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.05e-01 96.6% 25.5%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 45.0 2.59e-01 100.0% 26.0%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.34e-01 96.6% 69.0%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.56 45.0 3.52e-01 96.6% 77.5%
4mzuF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 41.0 2.79e-01 96.6% 31.1%
3c6cA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 44.0 2.56e-01 93.1% 98.0%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 41.0 2.95e-01 100.0% 22.0%
1oi6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 39.0 2.54e-01 100.0% 49.0%
2mhyA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.54 38.0 3.47e-01 100.0% 71.9%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.12e-01 96.6% 63.8%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.54 43.0 2.90e-01 93.1% 30.3%
1ub4C00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.54 39.0 3.15e-01 79.3% 28.0%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 38.0 2.19e-01 72.4% 5.7%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 44.0 3.37e-01 100.0% 68.9%
3rbtD01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 39.0 2.77e-01 100.0% 24.8%
4makB00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 45.0 3.43e-01 100.0% 60.5%
5buvB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 37.0 2.50e-01 96.6% 55.5%
4inoA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.52 43.0 2.83e-01 96.6% 73.5%
1nxmA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 33.0 2.26e-01 100.0% 25.3%
5nr1A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 40.0 2.89e-01 100.0% 34.0%
2z86D02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 42.0 2.45e-01 100.0% 27.3%
2jugA01 1.10.10.1830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Non-ribosomal peptide synthase, adenylation domain 0.51 40.0 3.41e-01 96.6% 70.9%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.50 42.0 2.60e-01 100.0% 38.6%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4936203 2003.2.1.0 a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 0.86 46.0 2.66e-01 96.6% 6.7%
4961292 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.76 46.0 3.30e-01 100.0% 24.0%
3740923 4.1.1.107 beta barrels › SH3 › SH3 › SH3 › XRN1_D1 0.75 61.0 3.78e-01 100.0% 16.1%
3960855 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.70 53.0 4.48e-01 100.0% 50.0%
5079277 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.66 51.0 4.25e-01 96.6% 44.8%
3941213 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.65 45.0 3.15e-01 96.6% 21.0%
5069558 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 46.0 4.02e-01 79.3% 84.4%
4172626 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.63 44.0 2.63e-01 82.8% 8.9%
3308532 67.1.1.0 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain 0.63 47.0 4.13e-01 100.0% 96.4%
4481010 857.1.1.1 a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA 0.62 44.0 3.15e-01 89.7% 21.0%
3482807 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.62 46.0 3.32e-01 100.0% 49.1%
3612973 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 50.0 3.42e-01 93.1% 44.0%
4928755 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.61 48.0 3.82e-01 89.7% 43.3%
5015567 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.61 43.0 2.69e-01 96.6% 15.2%
5014575 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 3.43e-01 100.0% 28.2%
4937151 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.60 43.0 3.84e-01 72.4% 42.0%
5014569 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.60 46.0 2.90e-01 100.0% 14.5%
4817717 2004.1.1.1181 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran_Xtn 0.60 47.0 3.29e-01 89.7% 52.5%
4879192 10.5.1.1 beta sandwiches › jelly-roll › Viral protein domain › Viral protein domain › Hemagglutinin 0.59 43.0 2.81e-01 100.0% 57.8%
3249581 7512.1.1.6 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.58 45.0 2.67e-01 93.1% 9.8%
4993116 1.1.3.1 beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.58 42.0 3.81e-01 96.6% 54.0%
224284 857.1.1.1 a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA 0.58 42.0 3.04e-01 86.2% 21.5%
3221312 1089.1.1.1 a+b two layers › Asparaginal-tRNA synthetase N-terminal domain › Asparaginal-tRNA synthetase N-terminal domain › Asparaginal-tRNA synthetase N-terminal domain › AsnRS_N 0.58 41.0 3.36e-01 96.6% 37.3%
5041526 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.58 47.0 3.80e-01 96.6% 96.7%
4026684 192.20.1.7 alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD › PF26729 0.57 41.0 2.85e-01 79.3% 36.2%
4934525 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.55 44.0 2.46e-01 96.6% 14.9%
4967749 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.55 43.0 2.85e-01 100.0% 39.3%
3939653 1089.1.1.1 a+b two layers › Asparaginal-tRNA synthetase N-terminal domain › Asparaginal-tRNA synthetase N-terminal domain › Asparaginal-tRNA synthetase N-terminal domain › AsnRS_N 0.55 39.0 3.24e-01 100.0% 38.7%
4336179 3322.1.1.1 alpha bundles › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › FAS_N 0.55 39.0 2.70e-01 86.2% 17.7%
3816176 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.55 44.0 2.97e-01 89.7% 25.7%
4863977 304.51.1.0 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.55 42.0 3.44e-01 86.2% 65.5%
976738 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.55 47.0 2.85e-01 100.0% 55.5%
3581763 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 40.0 3.28e-01 96.6% 74.3%
3871788 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 41.0 4.07e-01 100.0% 83.3%
4872013 10.5.1.1 beta sandwiches › jelly-roll › Viral protein domain › Viral protein domain › Hemagglutinin 0.53 37.0 2.53e-01 100.0% 60.8%
4025807 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 39.0 3.57e-01 100.0% 62.5%
3931942 297.1.1.2 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Sua5_yciO_yrdC 0.51 40.0 2.53e-01 96.6% 22.0%
4177037 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.51 43.0 3.51e-01 96.6% 94.5%
4931446 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.51 42.0 2.80e-01 100.0% 86.7%
4137642 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.51 43.0 3.45e-01 100.0% 85.0%
4973244 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.51 39.0 2.53e-01 89.7% 95.1%
4598960 304.36.1.0 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like 0.50 44.0 3.25e-01 96.6% 52.9%
3966338 327.16.1.19 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › NRho 0.50 41.0 3.48e-01 96.6% 98.2%