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YP_529519.1

Arc-Vir

NC_007914__YP_529519.1__His1V-gp07__00007

Identity

Accession:
NC_007914 ↗
Protein ID:
YP_529519.1 ↗
Kingdom:
archaea

Quality

79.6 mean pLDDT

Taxonomy

Halspiviridae› Salterprovirus› His_1_virus

TaxID: 128708

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-35
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2apoB00 2.20.28.40 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › H/ACA ribonucleoprotein complex, subunit Nop10 0.86 66.0 5.71e-01 94.3% 54.5%
2gnrA01 6.10.30.10 Special › Helix non-globular › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › 0.76 62.0 5.03e-01 94.3% 53.6%
2bbwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 61.0 3.79e-01 97.1% 19.5%
4y97D00 1.10.3200.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger 0.73 58.0 3.74e-01 97.1% 25.3%
1ak2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.73 62.0 3.84e-01 100.0% 20.5%
2ayjA00 4.10.1060.50 Few Secondary Structures › Irregular › ZNF265 like › 0.72 57.0 5.14e-01 100.0% 64.3%
6hoyA02 2.20.28.200 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.71 56.0 5.10e-01 91.4% 89.8%
1kk1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 56.0 3.58e-01 100.0% 16.8%
6rxpA02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.70 55.0 4.14e-01 94.3% 48.4%
1yuzA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.69 55.0 5.41e-01 97.1% 94.7%
3b08E00 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.68 48.0 4.23e-01 80.0% 50.8%
3u31A02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.67 51.0 3.85e-01 91.4% 45.5%
2conA00 6.20.210.10 Special › Other non-globular › Herpes Virus-1 › Nin one binding (NOB1), Zn-ribbon-like 0.67 53.0 4.32e-01 100.0% 46.8%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 51.0 3.84e-01 91.4% 61.0%
1dfxA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.67 52.0 3.65e-01 91.4% 28.0%
4xxbB00 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.66 49.0 4.74e-01 88.6% 78.6%
1vziA01 2.20.28.100 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain 0.66 53.0 5.26e-01 94.3% 94.7%
2ebqA00 4.10.1060.10 Few Secondary Structures › Irregular › ZNF265 like › Zinc finger, RanBP2-type 0.64 46.0 4.34e-01 82.9% 61.7%
4ba0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 46.0 4.20e-01 85.7% 68.6%
2lgvA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 45.0 3.48e-01 97.1% 48.0%
1olzA02 3.30.1680.10 Alpha Beta › 2-Layer Sandwich › ligand-binding face of the semaphorins, domain 2 › ligand-binding face of the semaphorins, domain 2 0.55 41.0 3.71e-01 91.4% 61.4%
2jubA01 3.30.160.860 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 39.0 3.86e-01 77.1% 59.5%
2levA00 4.10.430.10 Few Secondary Structures › Irregular › H-NS DNA Binding Protein › Histone-like protein H-NS, C-terminal domain 0.54 39.0 3.60e-01 94.3% 77.2%
2ciqA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 38.0 2.37e-01 88.6% 32.4%
5lznA00 3.10.20.360 Alpha Beta › Roll › Ubiquitin-like (UB roll) › CKK domain 0.52 38.0 2.89e-01 91.4% 92.8%
4kdiD00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 37.0 3.08e-01 85.7% 54.7%
3d4rE01 2.40.128.400 Mainly Beta › Beta Barrel › Lipocalin › 0.51 37.0 3.13e-01 100.0% 88.1%
3doaA03 3.40.970.40 Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › fibrinogen binding protein from staphylococcus aureus domain like 0.51 37.0 3.65e-01 88.6% 81.4%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4948217 375.4.1.0 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like 0.83 68.0 6.60e-01 97.1% 82.5%
4969647 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.82 66.0 4.59e-01 91.4% 28.2%
5027411 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.81 70.0 3.81e-01 100.0% 13.2%
4943585 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 65.0 6.58e-01 97.1% 94.3%
5036844 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 62.0 5.79e-01 85.7% 66.7%
5071328 375.1.1.48 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF35_N 0.80 66.0 5.72e-01 94.3% 67.3%
4390953 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 60.0 6.32e-01 85.7% 100.0%
4942759 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 64.0 6.37e-01 100.0% 97.4%
5050748 375.1.1.204 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PolC_DP2_central 0.78 65.0 4.66e-01 97.1% 41.2%
119408 375.1.1.48 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF35_N 0.76 61.0 6.16e-01 91.4% 97.1%
3269360 375.4.1.0 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like 0.75 54.0 5.52e-01 80.0% 93.3%
5001541 2500.1.1.5 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.75 62.0 3.37e-01 100.0% 14.1%
4991657 375.1.1.48 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF35_N 0.74 61.0 6.14e-01 91.4% 91.4%
5068448 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.74 57.0 4.07e-01 91.4% 27.8%
3700242 355.1.1.0 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like 0.74 54.0 4.92e-01 97.1% 58.0%
5076714 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 58.0 5.19e-01 97.1% 61.8%
4970624 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.73 59.0 3.29e-01 100.0% 13.3%
4241211 375.1.1.204 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PolC_DP2_central 0.72 60.0 4.38e-01 100.0% 33.3%
3609075 375.1.1.4 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RanBP 0.72 56.0 4.26e-01 100.0% 44.0%
5059159 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.71 54.0 3.89e-01 91.4% 28.3%
3426919 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 50.0 5.09e-01 85.7% 100.0%
3258348 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 51.0 5.21e-01 85.7% 100.0%
3448510 375.10.1.2 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.70 52.0 4.44e-01 91.4% 47.7%
135922 375.1.1.4 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RanBP 0.70 47.0 4.72e-01 74.3% 100.0%
4163070 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.69 54.0 3.31e-01 100.0% 13.5%
5063434 375.1.1.48 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF35_N 0.69 54.0 5.14e-01 97.1% 77.8%
4995670 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 56.0 5.46e-01 100.0% 92.5%
3418268 375.1.1.229 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TEX13 0.69 50.0 5.04e-01 85.7% 100.0%
3511138 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 51.0 4.98e-01 88.6% 77.5%
4940675 375.1.1.6 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L40e 0.68 53.0 5.20e-01 97.1% 95.0%
3701763 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 50.0 4.98e-01 91.4% 100.0%
3819271 375.10.1.2 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.67 50.0 4.28e-01 91.4% 47.7%
5047644 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 52.0 5.02e-01 100.0% 93.3%
4158088 375.1.1.218 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Ribbon_1 0.67 52.0 5.01e-01 100.0% 91.1%
3701761 375.1.1.133 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ribbon_3 0.66 47.0 4.74e-01 88.6% 100.0%
3615225 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 49.0 3.39e-01 91.4% 43.4%
3206604 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 48.0 4.85e-01 91.4% 100.0%
5032428 375.1.1.218 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Ribbon_1 0.64 46.0 4.64e-01 91.4% 100.0%
3231449 375.1.1.4 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RanBP 0.64 47.0 4.66e-01 88.6% 77.5%
3709220 4138.1.1.0 ↗ few secondary structure elements › Granulin repeat › Granulin repeat › Granulin repeat 0.64 45.0 4.17e-01 85.7% 54.5%
3929717 355.1.1.0 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like 0.63 46.0 4.36e-01 91.4% 64.4%
4309086 5056.1.1.1 ↗ extended segments › Gated mechanosensitive channel › Gated mechanosensitive channel › Gated mechanosensitive channel › MscL 0.61 43.0 2.97e-01 88.6% 21.8%
None — 0.59 42.0 3.16e-01 91.4% 30.8%
4945850 101.1.2.899 ↗ alpha arrays › HTH › HTH › winged helix domain › Zn_Ribbon_1 0.57 41.0 2.99e-01 88.6% 23.1%
3887868 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.56 43.0 3.77e-01 91.4% 61.7%
3303056 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.55 38.0 3.13e-01 74.3% 95.7%
4181914 2.1.1.16 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind 0.50 35.0 2.51e-01 77.1% 68.9%