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YP_529545.1
Arc-VirNC_007914__YP_529545.1__His1V-gp33__00033
Identity
- Accession:
- NC_007914 ↗
- Protein ID:
- YP_529545.1 ↗
- Kingdom:
- archaea
Quality
74.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-60
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lcqA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.73 | 47.0 | 5.21e-01 | 81.6% | 86.8% |
| 3axsA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.73 | 56.0 | 3.35e-01 | 87.8% | 12.7% |
| 1yuzA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.71 | 50.0 | 5.35e-01 | 87.8% | 97.4% |
| 6hoyA02 | 2.20.28.200 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.71 | 48.0 | 4.84e-01 | 71.4% | 87.8% |
| 3doaA03 | 3.40.970.40 | Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › fibrinogen binding protein from staphylococcus aureus domain like | 0.64 | 38.0 | 3.99e-01 | 85.7% | 65.1% |
| 3iwzA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 30.0 | 2.18e-01 | 100.0% | 17.2% |
| 2k2dA00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.59 | 40.0 | 4.11e-01 | 85.7% | 76.6% |
| 1zc1A01 | 2.40.40.50 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain | 0.58 | 42.0 | 3.41e-01 | 79.6% | 49.5% |
| 3gasB02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 40.0 | 2.78e-01 | 73.5% | 49.4% |
| 3tcaA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 44.0 | 3.63e-01 | 85.7% | 62.2% |
| 1gwmA00 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.55 | 38.0 | 2.75e-01 | 73.5% | 28.1% |
| 3kalB05 | 3.30.1490.50 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain | 0.54 | 38.0 | 3.62e-01 | 79.6% | 62.7% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.54 | 41.0 | 3.15e-01 | 85.7% | 45.2% |
| 2m2dA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 37.0 | 2.91e-01 | 73.5% | 53.4% |
| 5tjjA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 35.0 | 3.05e-01 | 98.0% | 49.3% |
| 1a9xB02 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.50 | 40.0 | 2.77e-01 | 100.0% | 28.9% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5000735 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.81 | 58.0 | 3.84e-01 | 75.5% | 22.9% |
| 4466102 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.79 | 56.0 | 3.79e-01 | 75.5% | 22.9% |
| 4246886 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 58.0 | 5.62e-01 | 79.6% | 72.7% |
| 4546356 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 54.0 | 4.49e-01 | 75.5% | 45.9% |
| 4927501 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.76 | 55.0 | 3.24e-01 | 87.8% | 10.1% |
| 3550392 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 54.0 | 3.59e-01 | 75.5% | 24.9% |
| 5022651 | 375.11.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain in CopZ › Zinc-binding domain in CopZ | 0.76 | 53.0 | 4.68e-01 | 79.6% | 51.4% |
| 4795496 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.76 | 53.0 | 4.65e-01 | 73.5% | 64.3% |
| 4507638 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.75 | 56.0 | 3.83e-01 | 79.6% | 24.2% |
| 5042462 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.75 | 57.0 | 3.90e-01 | 81.6% | 24.8% |
| 4221024 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 56.0 | 3.64e-01 | 79.6% | 19.5% |
| 4344487 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.75 | 56.0 | 3.82e-01 | 79.6% | 24.2% |
| 4645846 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.74 | 57.0 | 3.83e-01 | 81.6% | 24.7% |
| 4338085 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 56.0 | 5.82e-01 | 81.6% | 88.9% |
| 4527101 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.73 | 52.0 | 3.61e-01 | 75.5% | 25.0% |
| 4403519 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 54.0 | 3.69e-01 | 81.6% | 24.7% |
| 4029392 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.71 | 53.0 | 3.52e-01 | 79.6% | 24.9% |
| 3809044 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 51.0 | 5.28e-01 | 77.6% | 82.2% |
| 3712416 | 375.1.1.187 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zf_2nd_IFT121 | 0.71 | 46.0 | 4.13e-01 | 71.4% | 47.1% |
| 4015651 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 48.0 | 5.33e-01 | 71.4% | 100.0% |
| 5004620 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 47.0 | 5.04e-01 | 71.4% | 90.0% |
| 4125602 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 48.0 | 5.03e-01 | 79.6% | 84.4% |
| 5027909 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 48.0 | 4.59e-01 | 89.8% | 65.0% |
| 4334910 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.67 | 57.0 | 4.32e-01 | 100.0% | 64.8% |
| 5027281 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 46.0 | 4.40e-01 | 85.7% | 62.1% |
| 3415372 | 376.1.1.70 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Sina_RING | 0.67 | 44.0 | 3.94e-01 | 75.5% | 45.3% |
| 3598442 | 376.1.1.78 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Zf_2nd_IFT121 | 0.66 | 44.0 | 4.52e-01 | 71.4% | 75.6% |
| 3276937 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 45.0 | 4.95e-01 | 75.5% | 100.0% |
| 3440046 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 47.0 | 4.99e-01 | 85.7% | 95.0% |
| 4971115 | 2002.4.1.2 ↗ | a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › QRPTase_C | 0.64 | 53.0 | 3.27e-01 | 93.9% | 15.7% |
| 4515364 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.63 | 44.0 | 3.41e-01 | 79.6% | 32.2% |
| 3469438 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.62 | 42.0 | 3.52e-01 | 75.5% | 38.9% |
| 4505851 | 375.1.1.18 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › SIR2 | 0.62 | 47.0 | 3.07e-01 | 85.7% | 34.9% |
| 4931282 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 44.0 | 4.69e-01 | 77.6% | 95.0% |
| 3433661 | 375.1.1.51 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 | 0.61 | 43.0 | 4.67e-01 | 77.6% | 92.5% |
| 3702338 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 42.0 | 4.46e-01 | 73.5% | 95.0% |
| 3516134 | 2003.1.4.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 | 0.60 | 45.0 | 2.90e-01 | 85.7% | 31.4% |
| 3300282 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 40.0 | 4.05e-01 | 83.7% | 75.0% |
| 3467991 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.56 | 39.0 | 2.64e-01 | 95.9% | 18.0% |
| 2100983 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.55 | 40.0 | 3.32e-01 | 77.6% | 46.1% |
| 4946461 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.52 | 38.0 | 2.60e-01 | 83.7% | 33.2% |
| 4959631 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.50 | 40.0 | 2.61e-01 | 98.0% | 44.5% |