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NC_007917.1__YP_529607.1__CDBPCV119_gp56__00056
Bact-VirNC_007917.1__YP_529607.1__CDBPCV119_gp56__00056
Identity
- Accession:
- NC_007917 ↗
- Kingdom:
- phage
Quality
79.6
mean pLDDT
Taxonomy
TaxID: 2883936
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 42-117
Domain cluster:
rep: OM634653.1__UNH58431.1__X__00088__D2-87
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1njhA00 | 2.70.180.10 | Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF | 0.71 | 63.0 | 5.61e-01 | 100.0% | 77.8% |
| 3vn5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.62 | 37.0 | 3.93e-01 | 82.9% | 66.7% |
| 1ddvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 52.0 | 4.78e-01 | 100.0% | 78.8% |
| 2lydA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 53.0 | 4.45e-01 | 100.0% | 61.2% |
| 1epaA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.60 | 53.0 | 4.21e-01 | 100.0% | 65.6% |
| 1vwxk00 | 3.30.720.90 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.58 | 41.0 | 4.24e-01 | 90.8% | 81.2% |
| 3sreA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 45.0 | 3.03e-01 | 88.2% | 90.9% |
| 4gzuB03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 46.0 | 4.43e-01 | 100.0% | 78.0% |
| 2d0bA01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.57 | 35.0 | 3.38e-01 | 85.5% | 52.8% |
| 4azpA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 48.0 | 4.06e-01 | 100.0% | 88.8% |
| 3igfA02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 40.0 | 4.10e-01 | 77.6% | 91.9% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 39.0 | 3.52e-01 | 90.8% | 54.3% |
| 3rv0B03 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 39.0 | 3.92e-01 | 85.5% | 74.7% |
| 2bzyA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 30.0 | 3.25e-01 | 78.9% | 61.3% |
| 3mb5A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.54 | 38.0 | 4.09e-01 | 100.0% | 90.3% |
| 1nr0A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 48.0 | 3.22e-01 | 98.7% | 99.7% |
| 6u5uG07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.54 | 44.0 | 3.75e-01 | 92.1% | 94.7% |
| 4q63A00 | 2.40.10.430 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.53 | 37.0 | 3.51e-01 | 73.7% | 79.6% |
| 1r7lA00 | 3.30.2120.10 | Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like | 0.53 | 39.0 | 3.51e-01 | 77.6% | 84.5% |
| 6i8xA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 46.0 | 3.73e-01 | 100.0% | 91.3% |
| 4cc2A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 37.0 | 3.99e-01 | 100.0% | 90.5% |
| 2hgaA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.52 | 45.0 | 4.39e-01 | 100.0% | 94.1% |
| 2k8qA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 39.0 | 3.35e-01 | 84.2% | 62.7% |
| 2oolA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 37.0 | 3.38e-01 | 77.6% | 87.9% |
| 7mhwA01 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 44.0 | 4.24e-01 | 98.7% | 100.0% |
| 3dxpA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 42.0 | 3.98e-01 | 92.1% | 92.5% |
| 5mmiG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.51 | 39.0 | 3.87e-01 | 85.5% | 88.1% |
| 6epkA02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.51 | 33.0 | 3.42e-01 | 100.0% | 70.4% |
| 6u5vB07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 41.0 | 3.53e-01 | 92.1% | 94.6% |
| 3kstA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.50 | 39.0 | 2.70e-01 | 86.8% | 35.1% |
| 4mxtA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.50 | 41.0 | 3.19e-01 | 93.4% | 83.4% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3276072 | 220.1.1.7 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS | 0.62 | 50.0 | 4.56e-01 | 100.0% | 66.7% |
| 4351809 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.61 | 40.0 | 4.42e-01 | 96.1% | 86.7% |
| 3259514 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 53.0 | 4.58e-01 | 100.0% | 63.3% |
| 4939428 | 56.2.1.1 ↗ | beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT | 0.60 | 43.0 | 4.70e-01 | 90.8% | 98.3% |
| 2596548 | 56.2.1.1 ↗ | beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT | 0.60 | 45.0 | 4.67e-01 | 86.8% | 90.0% |
| 3948079 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.59 | 52.0 | 4.53e-01 | 100.0% | 92.5% |
| 4044269 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.59 | 39.0 | 4.03e-01 | 100.0% | 74.3% |
| 3743579 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.59 | 50.0 | 3.34e-01 | 94.7% | 99.0% |
| 148788 | 5.1.3.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase | 0.57 | 45.0 | 3.03e-01 | 88.2% | 90.9% |
| 5061930 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 47.0 | 4.36e-01 | 96.1% | 71.6% |
| 3885958 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.57 | 44.0 | 4.29e-01 | 84.2% | 92.9% |
| 3903260 | 109.4.1.2707 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PH_21 | 0.57 | 44.0 | 2.77e-01 | 90.8% | 14.8% |
| 3259098 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.57 | 48.0 | 4.21e-01 | 100.0% | 62.5% |
| 5042178 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.56 | 39.0 | 4.22e-01 | 100.0% | 93.3% |
| 3517357 | 319.1.1.7 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › SHQ1-like_CS | 0.55 | 42.0 | 3.87e-01 | 82.9% | 82.0% |
| 3903171 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.55 | 49.0 | 3.24e-01 | 98.7% | 99.4% |
| 3510681 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 44.0 | 4.48e-01 | 100.0% | 90.7% |
| 4966519 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.54 | 37.0 | 4.01e-01 | 100.0% | 91.7% |
| 3308710 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 32.0 | 3.35e-01 | 71.1% | 64.3% |
| 3585833 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.53 | 38.0 | 3.45e-01 | 77.6% | 90.9% |
| 3949940 | 319.1.1.4 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 | 0.53 | 36.0 | 3.52e-01 | 78.9% | 63.5% |
| 4951062 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.53 | 36.0 | 3.95e-01 | 100.0% | 91.7% |
| 4210866 | 319.1.1.4 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 | 0.53 | 38.0 | 3.73e-01 | 77.6% | 82.4% |
| 5826 | 330.5.1.2 ↗ | a+b two layers › dsRBD-like › Bacillus phage protein › Bacillus phage protein › Phage_ABA_S | 0.53 | 39.0 | 3.51e-01 | 77.6% | 84.5% |
| 5052436 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.52 | 37.0 | 3.68e-01 | 77.6% | 93.8% |
| 5055297 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 34.0 | 3.31e-01 | 100.0% | 60.0% |
| 3931011 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.51 | 45.0 | 3.82e-01 | 100.0% | 89.2% |
| 5046375 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.51 | 43.0 | 4.28e-01 | 97.4% | 97.5% |
| 3214149 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.51 | 34.0 | 3.62e-01 | 98.7% | 81.5% |
| 5032559 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.51 | 39.0 | 3.75e-01 | 86.8% | 95.6% |