NC_007917.1__YP_529628.1__CDBPCV119_gp77__00077

Bact-Vir

Identity

89.8 mean pLDDT

Heunggongvirae› Uroviricota› Caudoviricetes› Lubbockvirus› Clostridium_phage_phi_CD119

TaxID: 2883936

View cluster (4 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-195

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF16162.11 best	KwaB	62.4	8.00e-17	43.5%	43.0%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4r80A00	3.10.450.630	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.66	23.0	3.53e-01	90.9%	75.0%
1ylxA00	3.30.70.1480	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like	0.61	26.0	3.41e-01	93.5%	68.7%
4rt0A00	2.40.10.220	Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains	0.53	26.0	3.23e-01	83.9%	74.3%
2jqjA01	2.60.200.20	Mainly Beta › Sandwich › Tumour Suppressor Smad4 ›	0.52	24.0	2.89e-01	93.0%	62.3%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3785041	245.1.1.0 ↗	a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2	0.62	24.0	3.50e-01	94.6%	77.5%
4024397	59.1.1.0 ↗	beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like	0.53	29.0	3.15e-01	91.9%	61.3%
4974640	1.1.5.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel	0.53	36.0	4.12e-01	92.5%	92.8%
4982411	1.1.5.8 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx	0.52	36.0	4.23e-01	92.5%	100.0%
4963864	1.1.5.31 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2	0.52	36.0	4.19e-01	91.9%	97.8%
None	—		0.51	29.0	2.33e-01	90.9%	28.5%

D2 high residues 197-310

PDB

Domain cluster: rep: MN830253.1__QHJ74811.1__X__00066__D209-309

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF16162.11 best	KwaB	89.2	4.80e-25	95.6%	54.8%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1yj7B01	3.30.70.1530	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041	0.64	31.0	3.87e-01	73.7%	74.6%
1in0A01	3.30.70.860	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.61	33.0	3.99e-01	71.9%	82.9%
3aeiA00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.59	23.0	2.53e-01	79.8%	42.6%
2gqcA01	3.30.70.2080	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.55	28.0	3.58e-01	71.1%	94.6%
3anwA01	1.20.58.1030	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	27.0	2.76e-01	100.0%	47.8%
7txnA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	30.0	3.30e-01	82.5%	74.4%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4952659	304.120.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI	0.63	34.0	4.15e-01	75.4%	84.3%
3578641	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.59	31.0	3.74e-01	74.6%	80.0%
4288869	327.10.1.11 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DNA_pol3_a_NII	0.58	32.0	3.80e-01	87.7%	77.5%
5057781	101.1.2.55 ↗	alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB	0.55	27.0	3.12e-01	98.2%	63.7%
3593589	1128.1.1.0 ↗	alpha bundles › LYR protein › LYR protein › LYR protein	0.54	45.0	4.41e-01	93.9%	98.4%
3621974	327.11.2.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I)	0.53	31.0	3.63e-01	80.7%	85.3%
3367719	3016.1.1.0 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases	0.52	31.0	3.68e-01	71.9%	89.3%
3867542	3826.1.1.0 ↗	alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR)	0.50	30.0	3.42e-01	88.6%	80.0%