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YP_529646.1

Arc-Vir

NC_007918__YP_529646.1__His2V-gp16__00016

Identity

Accession:
NC_007918 ↗
Protein ID:
YP_529646.1 ↗
Kingdom:
archaea

Quality

92.0 mean pLDDT

Taxonomy

Trapavirae› Saleviricota› Huolimaviricetes› Haloruvirales› Pleolipoviridae› Gammapleolipovirus› His2_virus

TaxID: 128710

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-79
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.66 59.0 4.57e-01 100.0% 73.1%
3ktaA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 47.0 3.69e-01 94.9% 36.6%
5troA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.64 47.0 3.17e-01 79.5% 79.8%
3os7A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 47.0 3.10e-01 78.2% 65.3%
4i99A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 49.0 3.27e-01 100.0% 20.8%
1x7dB01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.62 46.0 3.58e-01 78.2% 52.1%
3pu9A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.62 47.0 3.29e-01 79.5% 53.2%
1vmeB01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.61 52.0 3.68e-01 94.9% 91.6%
1ygaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 46.0 2.99e-01 79.5% 69.9%
5tseA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.61 44.0 3.69e-01 76.9% 85.3%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.60 55.0 4.50e-01 98.7% 78.7%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.60 46.0 3.69e-01 80.8% 59.7%
4nzrM02 2.160.20.180 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.60 46.0 3.49e-01 92.3% 34.8%
5h66A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 42.0 3.16e-01 73.1% 56.1%
4wrnA03 2.60.40.4100 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain 0.59 52.0 4.07e-01 100.0% 93.1%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 43.0 3.93e-01 76.9% 80.4%
3kl7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 52.0 3.75e-01 98.7% 98.2%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 4.02e-01 76.9% 100.0%
1c16A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 4.20e-01 84.6% 97.9%
1eq6A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.57 43.0 3.32e-01 82.1% 48.1%
4fekB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.57 48.0 3.39e-01 94.9% 91.1%
3f9sB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 3.51e-01 80.8% 92.9%
1y6zA01 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.56 50.0 4.03e-01 100.0% 55.8%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.56 40.0 3.21e-01 78.2% 39.5%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 47.0 3.83e-01 93.6% 94.6%
3ci0J01 3.10.610.10 Alpha Beta › Roll › Pili subunits › GSPII I/J protein-like 0.55 40.0 3.65e-01 76.9% 78.8%
3ikwA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.01e-01 91.0% 52.1%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 46.0 3.02e-01 100.0% 50.9%
7v8uA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 47.0 3.34e-01 100.0% 41.2%
4mj3B00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 46.0 3.17e-01 100.0% 32.1%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.91e-01 83.3% 100.0%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 43.0 3.91e-01 92.3% 73.0%
1w7cA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 3.39e-01 76.9% 57.4%
4jmdA00 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.53 44.0 3.23e-01 100.0% 84.8%
4i4kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.12e-01 97.4% 43.5%
2lktA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.51 35.0 3.07e-01 71.8% 92.8%
1je6A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.36e-01 71.8% 100.0%
4gb5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 3.33e-01 93.6% 47.3%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 41.0 3.54e-01 98.7% 66.0%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3250830 243.3.1.48 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › GlfB_C 0.80 55.0 3.87e-01 71.8% 39.1%
3961802 243.5.1.9 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › UPF0182 0.77 59.0 4.29e-01 80.8% 31.5%
3917010 243.3.1.20 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 0.73 54.0 4.55e-01 76.9% 55.2%
3749143 243.3.1.20 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 0.71 52.0 4.43e-01 76.9% 55.2%
3278990 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.67 51.0 4.03e-01 80.8% 48.1%
3654131 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.67 49.0 3.82e-01 76.9% 48.1%
3924550 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.67 52.0 4.18e-01 84.6% 59.4%
5052639 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.67 52.0 3.64e-01 82.1% 75.2%
3701124 4252.1.1.1 ↗ beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.66 58.0 4.33e-01 96.2% 86.8%
3783089 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.65 55.0 4.73e-01 91.0% 61.7%
3832622 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.65 57.0 3.73e-01 94.9% 36.2%
4965152 3692.1.1.1 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.65 50.0 4.19e-01 82.1% 55.0%
3680270 2004.1.1.567 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_23 0.64 45.0 2.70e-01 73.1% 22.2%
3520603 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.63 44.0 2.59e-01 89.7% 9.1%
3821609 2004.1.1.442 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.63 44.0 2.63e-01 73.1% 20.4%
3205741 2004.1.1.442 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.62 44.0 2.66e-01 73.1% 25.5%
3738140 3692.1.1.1 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.62 48.0 4.04e-01 82.1% 58.5%
4571190 3692.1.1.1 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.62 47.0 3.90e-01 80.8% 54.7%
3182497 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.62 44.0 2.72e-01 73.1% 26.5%
4973410 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 46.0 3.67e-01 79.5% 48.1%
4864627 2004.1.1.429 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.62 43.0 3.27e-01 73.1% 61.0%
3279738 3692.1.1.1 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.62 47.0 3.76e-01 80.8% 48.4%
3449212 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.62 44.0 3.22e-01 76.9% 31.9%
4314504 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 56.0 4.62e-01 100.0% 92.6%
4878467 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.61 39.0 3.67e-01 84.6% 53.1%
5024225 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.60 48.0 3.29e-01 98.7% 24.4%
3172477 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 44.0 3.63e-01 76.9% 97.9%
5041468 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 48.0 3.06e-01 89.7% 29.8%
3284807 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 41.0 3.40e-01 71.8% 45.9%
4266402 3692.1.1.1 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.58 45.0 3.88e-01 89.7% 52.8%
4946323 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.57 47.0 4.24e-01 94.9% 84.3%
3332187 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.57 46.0 3.22e-01 93.6% 49.3%
5003898 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.57 41.0 3.66e-01 76.9% 74.8%
3295485 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.57 46.0 3.15e-01 93.6% 42.8%
3444245 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.56 37.0 3.81e-01 74.4% 70.7%
3784499 331.3.1.6 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.56 50.0 3.83e-01 100.0% 43.2%
3915989 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.56 49.0 2.81e-01 100.0% 12.9%
4193109 2004.1.1.429 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.56 47.0 2.68e-01 100.0% 7.9%
3256421 2004.1.1.442 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.55 48.0 3.16e-01 100.0% 26.6%
3717198 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 47.0 3.02e-01 97.4% 86.1%
3282685 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 39.0 3.35e-01 73.1% 50.0%
3783275 243.3.1.64 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PF29059 0.55 40.0 3.61e-01 76.9% 66.1%
3697524 9.2.1.7 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › PF30970 0.55 40.0 3.80e-01 78.2% 65.6%
4974050 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.55 40.0 3.46e-01 98.7% 46.7%
4330494 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.55 49.0 3.42e-01 100.0% 52.5%
3869913 2004.1.1.442 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.55 45.0 2.88e-01 94.9% 23.4%
3713323 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.54 47.0 3.43e-01 100.0% 77.8%
3699312 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 45.0 2.90e-01 97.4% 86.4%
4012027 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 38.0 3.06e-01 76.9% 37.0%
3608162 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.53 43.0 3.46e-01 92.3% 61.8%
3632708 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.51 44.0 2.77e-01 96.2% 23.2%
5083024 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 44.0 2.80e-01 100.0% 58.1%
3949940 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.50 34.0 3.35e-01 78.2% 64.7%
3698145 304.112.1.1 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoL1 0.50 42.0 3.36e-01 100.0% 51.1%