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NC_008206.2__YP_655935.1__Wildcat_70__00070

Bact-Vir

NC_008206.2__YP_655935.1__Wildcat_70__00070

Identity

Accession:
NC_008206 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vilmaviridae› Wildcatvirus› Mycobacterium_phage_Wildcat

TaxID: 373415

Cluster

View cluster (40 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-82
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ir2A00 3.50.30.40 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like 0.62 54.0 3.76e-01 100.0% 77.5%
5cxmA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.62 43.0 3.80e-01 73.8% 65.7%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 46.0 3.13e-01 92.3% 98.0%
2c5qA00 3.50.30.40 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like 0.57 48.0 3.41e-01 100.0% 65.5%
1vw4F02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.55 38.0 3.49e-01 73.8% 84.8%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.55 42.0 4.40e-01 92.3% 100.0%
3kenA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.54 41.0 2.69e-01 84.6% 94.9%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 42.0 3.27e-01 95.4% 38.9%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.53 40.0 4.15e-01 92.3% 100.0%
1cdwA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 41.0 3.83e-01 90.8% 93.0%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 3.72e-01 75.4% 79.3%
1br2A04 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 44.0 3.36e-01 100.0% 56.9%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.52 35.0 3.47e-01 70.8% 85.7%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.52 38.0 3.68e-01 83.1% 94.9%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 39.0 3.59e-01 84.6% 89.0%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.51 40.0 3.32e-01 92.3% 90.4%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.88e-01 76.9% 89.1%
3gkeA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.51 41.0 3.46e-01 98.5% 93.1%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 43.0 2.83e-01 95.4% 37.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3386424 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 46.0 4.16e-01 100.0% 53.3%
1556157 6029.1.1.1 ↗ beta meanders › Hemin uptake protein hemP › Hemin uptake protein hemP › Hemin uptake protein hemP › hemP 0.63 28.0 3.38e-01 89.2% 61.9%
3476114 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.60 51.0 3.17e-01 98.5% 18.5%
3417954 2.1.1.39 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rbc25 0.60 46.0 3.92e-01 89.2% 85.0%
3400769 4099.1.1.21 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › RM3_Med14 0.59 41.0 3.05e-01 75.4% 56.2%
4804032 4963.1.2.1 ↗ alpha complex topology › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal domain in vesicular stomatitis virus RNA polymerase L › Mononeg_RNA_pol 0.57 49.0 3.49e-01 100.0% 33.6%
957543 2487.1.1.8 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like 0.57 48.0 3.41e-01 100.0% 65.5%
3722971 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.56 42.0 3.20e-01 81.5% 50.3%
151131 316.1.1.21 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit 0.56 44.0 3.31e-01 86.2% 77.2%
3973760 3772.1.1.1 ↗ beta sandwiches › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › FecR 0.56 43.0 3.68e-01 90.8% 88.3%
3665681 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.55 42.0 2.57e-01 84.6% 69.5%
4998113 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.54 36.0 4.12e-01 70.8% 97.8%
3459959 192.8.1.454 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Kinesin 0.54 40.0 2.55e-01 83.1% 72.8%
3740511 2.1.1.89 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term 0.54 37.0 3.47e-01 75.4% 74.4%
4002724 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.54 37.0 2.35e-01 73.8% 36.8%
3676012 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 40.0 2.60e-01 86.2% 86.9%
5081581 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 41.0 2.93e-01 90.8% 81.3%
2770114 5.1.4.301 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7 0.52 42.0 2.80e-01 98.5% 90.9%
4937915 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.52 35.0 3.12e-01 70.8% 50.5%
4158607 71.1.1.5 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF576 0.51 40.0 2.78e-01 86.2% 45.5%
3312580 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.51 39.0 2.66e-01 86.2% 91.1%
4030091 4099.1.1.2 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.50 36.0 2.67e-01 80.0% 38.0%
3280323 243.1.1.7 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.50 36.0 3.19e-01 78.5% 98.1%
3812379 1.1.1.27 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N 0.50 43.0 3.03e-01 100.0% 65.1%