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NC_008206.2__YP_655974.1__Wildcat_133__00109

Bact-Vir

NC_008206.2__YP_655974.1__Wildcat_133__00109

Identity

Accession:
NC_008206 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-62
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.87 66.0 5.15e-01 85.1% 40.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.82 73.0 4.88e-01 100.0% 45.5%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.81 73.0 5.99e-01 100.0% 65.9%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.77 56.0 4.51e-01 100.0% 40.0%
3votB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.76 56.0 3.40e-01 80.9% 27.3%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.75 64.0 5.23e-01 100.0% 53.3%
2uwqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.75 56.0 4.58e-01 100.0% 44.2%
3d82A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 48.0 3.70e-01 100.0% 31.4%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.72 57.0 5.18e-01 100.0% 63.6%
2zw2A00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.71 61.0 5.09e-01 100.0% 92.9%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.70 61.0 4.83e-01 100.0% 65.6%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.69 50.0 4.45e-01 100.0% 53.5%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.68 55.0 4.30e-01 100.0% 40.4%
4p4tA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 53.0 3.24e-01 100.0% 12.8%
1txoB00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.68 58.0 3.75e-01 100.0% 30.1%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.68 49.0 3.30e-01 76.6% 76.2%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.67 55.0 4.84e-01 100.0% 61.1%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.67 56.0 4.59e-01 100.0% 68.1%
5f1mA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.66 56.0 3.59e-01 100.0% 43.3%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.66 48.0 3.39e-01 80.9% 30.1%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.65 54.0 4.28e-01 100.0% 51.4%
4ehoB03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.65 47.0 3.17e-01 76.6% 52.0%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.65 50.0 4.24e-01 85.1% 55.4%
3b49A00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.64 51.0 3.43e-01 93.6% 82.4%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.64 49.0 3.75e-01 100.0% 36.0%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 55.0 4.72e-01 100.0% 67.1%
3gmgA00 3.30.70.1880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 0.64 55.0 3.93e-01 100.0% 73.4%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.63 50.0 4.99e-01 97.9% 90.0%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.62 44.0 3.27e-01 80.9% 42.3%
1vajA02 3.30.1490.150 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 0.61 52.0 4.54e-01 100.0% 71.6%
6cngA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.60 44.0 4.72e-01 97.9% 97.4%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 51.0 4.53e-01 100.0% 77.5%
3jr7A02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.60 44.0 4.72e-01 97.9% 97.4%
1l3lA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.60 49.0 3.36e-01 91.5% 90.0%
3qt2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 51.0 3.93e-01 100.0% 41.6%
4cvuA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 47.0 3.22e-01 100.0% 56.8%
1b1zA02 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 46.0 3.52e-01 100.0% 73.5%
1yq5A00 2.60.120.670 Mainly Beta › Sandwich › Jelly Rolls › Minor capsid protein. 0.57 48.0 3.49e-01 100.0% 33.3%
2g9gA00 2.60.120.1020 Mainly Beta › Sandwich › Jelly Rolls › PAW domain 0.57 47.0 3.24e-01 100.0% 45.0%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 3.67e-01 100.0% 41.3%
2yvlA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.55 47.0 4.46e-01 100.0% 86.2%
6v55A01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.55 46.0 3.53e-01 100.0% 39.3%
4h32A02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.55 47.0 3.10e-01 100.0% 21.8%
2rftA02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.55 47.0 3.03e-01 100.0% 22.2%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.55 44.0 3.35e-01 100.0% 41.7%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.54 40.0 3.00e-01 100.0% 27.7%
3ttcA01 3.90.870.30 Alpha Beta › Alpha-Beta Complex › DHBP synthase › 0.54 46.0 3.09e-01 100.0% 56.6%
3fysA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 45.0 3.23e-01 100.0% 36.6%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 45.0 3.48e-01 100.0% 94.8%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 45.0 3.25e-01 100.0% 85.6%
2qnuA00 3.40.1730.10 Alpha Beta › 3-Layer(aba) Sandwich › pa0076 fold › pa0076 domain 0.53 45.0 2.96e-01 95.7% 39.8%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 47.0 3.55e-01 100.0% 60.7%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 43.0 3.12e-01 100.0% 36.9%
2zbvC02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.51 40.0 3.36e-01 100.0% 59.8%
1vj2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 40.0 3.21e-01 100.0% 44.7%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5067915 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.88 62.0 3.78e-01 100.0% 14.0%
4935672 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.76 61.0 4.45e-01 100.0% 31.4%
4954188 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.76 61.0 4.35e-01 100.0% 29.5%
5048876 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.71 54.0 4.93e-01 100.0% 61.5%
3577630 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.70 61.0 4.44e-01 100.0% 38.5%
None 0.70 52.0 3.00e-01 80.9% 21.1%
2042105 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.69 51.0 3.36e-01 80.9% 73.0%
1566366 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.68 50.0 3.34e-01 78.7% 57.7%
4655745 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.68 58.0 4.62e-01 100.0% 94.0%
3816857 223.1.1.84 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF 0.68 51.0 2.97e-01 80.9% 26.9%
4940035 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 49.0 3.76e-01 78.7% 82.7%
4596042 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.67 48.0 3.29e-01 76.6% 75.3%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 56.0 4.95e-01 100.0% 68.0%
3699329 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.67 55.0 3.31e-01 97.9% 12.7%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 56.0 5.16e-01 100.0% 79.7%
3874516 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.66 52.0 3.04e-01 85.1% 32.5%
None 0.66 55.0 4.07e-01 100.0% 64.5%
2496895 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 52.0 4.38e-01 100.0% 50.5%
3587556 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.66 55.0 4.95e-01 100.0% 82.9%
3452954 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.66 55.0 3.13e-01 100.0% 15.0%
3318145 109.4.1.1521 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif 0.65 54.0 3.48e-01 100.0% 34.2%
3429551 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.64 53.0 3.18e-01 100.0% 22.0%
3310614 2008.1.1.146 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N 0.64 49.0 2.97e-01 83.0% 89.9%
3434515 109.4.1.2925 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, PPR_long, E_motif 0.64 53.0 2.97e-01 100.0% 12.9%
3831039 109.4.1.1599 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase 0.63 47.0 2.59e-01 80.9% 6.4%
3375945 109.4.1.619 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase 0.63 54.0 4.12e-01 100.0% 60.0%
4994897 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 44.0 3.32e-01 80.9% 28.9%
3603250 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.59 43.0 3.23e-01 78.7% 30.8%
3495764 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.59 51.0 3.43e-01 100.0% 35.7%
3258524 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.58 49.0 3.16e-01 100.0% 31.1%
3267853 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.57 49.0 3.20e-01 100.0% 29.1%
3907235 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.57 49.0 3.18e-01 100.0% 29.8%
3875549 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.57 48.0 3.26e-01 100.0% 32.8%
3571103 4081.1.1.8 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 0.55 46.0 3.08e-01 100.0% 26.5%
3637401 4081.1.1.8 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 0.55 45.0 3.04e-01 100.0% 30.0%
3343923 109.4.1.1156 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.55 42.0 2.73e-01 100.0% 28.6%
3876105 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 47.0 3.80e-01 97.9% 54.7%
5038375 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.55 46.0 3.12e-01 100.0% 32.0%
3322777 109.4.1.1738 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.55 46.0 2.77e-01 97.9% 84.3%
3258276 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.54 40.0 2.70e-01 97.9% 16.9%
3205036 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.54 45.0 2.94e-01 100.0% 26.9%
3351960 109.4.1.2979 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.54 48.0 2.65e-01 100.0% 9.6%
None 0.53 47.0 3.73e-01 100.0% 58.9%
3879988 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.53 44.0 2.93e-01 100.0% 46.5%
3543655 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.53 43.0 2.88e-01 100.0% 45.5%
3962617 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.53 43.0 2.97e-01 100.0% 31.7%
3242452 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 41.0 3.46e-01 100.0% 69.0%
3533173 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.53 41.0 3.61e-01 95.7% 96.2%
3252861 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.51 40.0 2.77e-01 100.0% 29.8%