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NC_008296.2__YP_717744.1__BSV9_gp77__00073

Bact-Vir

NC_008296.2__YP_717744.1__BSV9_gp77__00073

Identity

Accession:
NC_008296 ↗
Kingdom:
phage

Quality

72.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Ormenosvirus› Synechococcus_phage_syn9

TaxID: 382359

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-91
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ckdA02 1.20.58.360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines 0.73 50.0 3.99e-01 74.2% 36.3%
2bg1A01 3.90.1310.40 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › 0.65 43.0 3.98e-01 95.2% 54.5%
1auwA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.62 53.0 3.67e-01 100.0% 46.9%
4jgwA02 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.61 49.0 3.35e-01 91.9% 70.0%
3wscA00 1.20.1420.20 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif 0.58 48.0 3.35e-01 100.0% 31.1%
1vfrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.57 42.0 2.94e-01 79.0% 57.6%
3i4uA01 1.20.120.1080 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 41.0 3.51e-01 75.8% 63.9%
2ieqA00 1.20.5.300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 36.0 3.34e-01 71.0% 76.1%
1ithA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 40.0 3.10e-01 80.6% 48.9%
1f5oA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 44.0 3.42e-01 98.4% 72.5%
1dzfA01 3.40.1340.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna-directed Rna Polymerases I, Ii, And Iii 27 Kd Polypeptide; Chain: A; domain 1 › RNA polymerase, Rpb5, N-terminal domain 0.52 44.0 3.47e-01 98.4% 86.2%
3l0aA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.51 36.0 2.46e-01 79.0% 47.7%
5lewA03 1.10.10.1600 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Bacterial DNA polymerase III alpha subunit, thumb domain 0.51 40.0 3.84e-01 90.3% 82.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4181340 3949.1.1.0 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain 0.75 47.0 4.56e-01 100.0% 57.1%
5062669 632.23.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.71 63.0 6.02e-01 100.0% 86.3%
4001683 109.4.1.1504 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26103 0.69 49.0 2.86e-01 75.8% 9.5%
4242867 544.1.1.2 ↗ alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › SRA1 0.65 56.0 4.53e-01 100.0% 78.4%
3740089 1134.1.1.7 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 0.65 43.0 4.23e-01 71.0% 64.6%
4012164 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.64 43.0 4.26e-01 72.6% 66.2%
5052193 601.3.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.62 48.0 3.79e-01 100.0% 37.9%
3564333 108.1.1.42 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › CAPN13-like_C_EFh 0.60 44.0 3.12e-01 79.0% 31.2%
3478946 160.1.1.0 ↗ alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase 0.58 49.0 4.26e-01 96.8% 74.0%
5015091 148.1.3.256 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28529 0.57 47.0 4.00e-01 100.0% 54.2%
2491422 101.30.1.1 ↗ alpha arrays › HTH › Rv2175c › Rv2175c › Xre_MbcA_ParS_C 0.57 48.0 4.65e-01 98.4% 93.1%
3952706 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.57 48.0 4.61e-01 100.0% 85.3%
5082368 7583.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › ARMT1-like_dom 0.56 44.0 3.13e-01 95.2% 25.3%
132993 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 41.0 3.64e-01 100.0% 54.7%
3971256 101.1.4.13 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C 0.54 42.0 3.91e-01 95.2% 88.9%
3937096 230.5.1.1 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.54 46.0 3.78e-01 98.4% 55.0%
5059555 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.53 44.0 2.81e-01 100.0% 42.7%
3697459 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.52 45.0 3.91e-01 100.0% 90.0%
4301843 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.52 43.0 3.17e-01 100.0% 93.8%
3628851 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.52 40.0 3.18e-01 90.3% 64.1%
4251656 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.51 42.0 2.92e-01 96.8% 35.7%