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NC_008363.1__YP_762523.1__LPPV008_gp12__00012

Bact-Vir

NC_008363.1__YP_762523.1__LPPV008_gp12__00012

Identity

Accession:
NC_008363 ↗
Kingdom:
phage

Quality

58.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Skunavirus› Lactococcus_phage_P008

TaxID: 2908173

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 54-93
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x3aA01 2.60.40.2970 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 42.0 3.15e-01 87.5% 60.9%
3n5oA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 38.0 3.07e-01 90.0% 65.2%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002764 101.1.2.382 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD 0.58 40.0 2.69e-01 70.0% 16.5%
3392536 10.12.1.12 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD 0.58 44.0 2.77e-01 95.0% 44.5%
5065598 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.56 38.0 4.03e-01 95.0% 82.9%
4858488 136.1.1.3 ↗ alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › An_peroxidase 0.56 43.0 2.53e-01 95.0% 10.9%
3524700 389.1.1.102 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF, cEGF 0.53 36.0 3.53e-01 72.5% 91.1%
3218568 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.53 39.0 2.39e-01 87.5% 57.1%
5076443 205.1.1.0 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.52 34.0 2.99e-01 70.0% 37.3%
3285326 7581.1.1.29 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ACP_syn_III_C, ACP_syn_III 0.51 38.0 2.36e-01 100.0% 90.0%
3502588 375.1.8.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Cytochrome c oxidase Subunit F 0.50 39.0 3.45e-01 95.0% 56.9%
3747882 389.1.1.28 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › cEGF 0.50 34.0 3.36e-01 72.5% 91.1%