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NC_008562.1__YP_851033.1__MaLMM01_gp019__00019
Bact-VirNC_008562.1__YP_851033.1__MaLMM01_gp019__00019
Identity
- Accession:
- NC_008562 ↗
- Kingdom:
- phage
Quality
71.6
mean pLDDT
Taxonomy
TaxID: 2856824
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 247-333
Domain cluster:
rep: MW117966.1__QPB08094.1__X__00046__D18-92_358-368
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07484.18 best | Collar | 49.0 | 6.60e-13 | 66.7% | 87.7% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xgfA01 | 3.90.1340.10 | Alpha Beta › Alpha-Beta Complex › heat- and protease-stable fragment of the bacteriophage t4 short fibre, domain 3 › Phage tail collar domain | 0.86 | 53.0 | 6.46e-01 | 89.7% | 96.4% |
| 1ocyA01 | 3.90.1340.10 | Alpha Beta › Alpha-Beta Complex › heat- and protease-stable fragment of the bacteriophage t4 short fibre, domain 3 › Phage tail collar domain | 0.83 | 65.0 | 6.99e-01 | 97.7% | 94.7% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4784856 | 877.1.1.2 ↗ | a+b duplicates or obligate multimers › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › Collar | 0.82 | 60.0 | 6.76e-01 | 93.1% | 98.5% |
| 1839976 | 877.1.1.3 ↗ | a+b duplicates or obligate multimers › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › Collar,S_tail_recep_bd | 0.75 | 69.0 | 5.14e-01 | 97.7% | 98.0% |
| 3981712 | 877.1.1.2 ↗ | a+b duplicates or obligate multimers › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › Collar | 0.67 | 54.0 | 4.43e-01 | 83.9% | 100.0% |
| 141225 | 877.1.1.1 ↗ | a+b duplicates or obligate multimers › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › Phage_fiber,Collar | 0.66 | 55.0 | 4.05e-01 | 89.7% | 99.1% |
D2
medium
residues 117-221
Domain cluster:
representative