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NC_008562.1__YP_851074.1__MaLMM01_gp060__00060

Bact-Vir

NC_008562.1__YP_851074.1__MaLMM01_gp060__00060

Identity

Accession:
NC_008562 ↗
Kingdom:
phage

Quality

65.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 19-95
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 56.0 5.53e-01 85.7% 76.5%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.69 62.0 5.02e-01 100.0% 89.0%
6sulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 52.0 4.71e-01 85.7% 95.4%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 43.0 4.44e-01 71.4% 69.3%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.66 55.0 4.64e-01 94.8% 83.0%
4k35A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.65 51.0 3.75e-01 84.4% 46.6%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 49.0 4.06e-01 80.5% 47.4%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 58.0 3.67e-01 98.7% 66.5%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 49.0 5.27e-01 85.7% 100.0%
5evhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 50.0 4.33e-01 84.4% 86.8%
3bt3A02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.63 40.0 4.50e-01 76.6% 86.0%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 56.0 4.43e-01 100.0% 85.2%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 49.0 4.17e-01 84.4% 82.0%
3w7tA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.63 52.0 3.63e-01 88.3% 38.4%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.62 49.0 3.85e-01 97.4% 40.4%
5r0dB01 2.60.34.20 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › 0.62 49.0 3.97e-01 84.4% 99.3%
3a46A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.62 49.0 4.10e-01 85.7% 86.8%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 48.0 4.14e-01 84.4% 91.9%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.60 45.0 4.03e-01 81.8% 78.8%
3fh1A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 46.0 3.99e-01 84.4% 90.2%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 45.0 4.10e-01 85.7% 97.2%
1zylA01 3.30.200.70 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.59 45.0 4.64e-01 83.1% 100.0%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 49.0 4.65e-01 92.2% 96.7%
5c98B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 49.0 4.08e-01 92.2% 81.4%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 51.0 4.65e-01 100.0% 96.1%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 4.11e-01 92.2% 82.3%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 50.0 4.50e-01 98.7% 82.4%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.56 43.0 3.36e-01 83.1% 51.1%
7jiuA03 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.56 47.0 3.96e-01 94.8% 95.6%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 43.0 2.90e-01 83.1% 26.2%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 46.0 3.23e-01 88.3% 33.3%
4huzA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 42.0 3.40e-01 87.0% 39.2%
1x5mA01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 4.08e-01 89.6% 90.6%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 50.0 4.65e-01 98.7% 92.6%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.55 34.0 3.90e-01 80.5% 90.2%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.55 42.0 3.37e-01 81.8% 87.7%
1qhlA00 3.40.1140.10 Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › 0.55 42.0 3.14e-01 83.1% 44.8%
3jvnA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 42.0 3.65e-01 84.4% 91.0%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 45.0 4.09e-01 94.8% 83.6%
3bdrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 49.0 3.86e-01 100.0% 76.3%
6dnzA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.53 43.0 3.33e-01 90.9% 83.1%
1yliB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 46.0 3.77e-01 100.0% 75.7%
4ckmB00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.52 39.0 3.27e-01 81.8% 95.8%
2fclA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.52 44.0 3.55e-01 96.1% 73.1%
2kczA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 44.0 3.59e-01 98.7% 67.1%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.52 45.0 3.87e-01 100.0% 66.7%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 36.0 3.29e-01 100.0% 53.8%
2qwzA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 43.0 3.71e-01 96.1% 77.4%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.51 42.0 3.44e-01 93.5% 65.6%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.51e-01 98.7% 68.3%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.51 35.0 3.42e-01 100.0% 62.9%
6h5bB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 36.0 3.19e-01 76.6% 98.3%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 38.0 3.31e-01 81.8% 76.5%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3838481 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.71 58.0 5.80e-01 100.0% 85.0%
3713198 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.68 54.0 4.27e-01 85.7% 76.1%
5063704 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 52.0 5.59e-01 83.1% 100.0%
1891431 9.1.1.28 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Pallilysin 0.66 52.0 4.39e-01 84.4% 75.2%
4596146 243.1.1.104 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Imm-NTF2 0.66 50.0 4.17e-01 80.5% 90.8%
4611906 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.65 44.0 3.62e-01 71.4% 80.0%
3939595 5.1.5.88 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nucleoporin_N 0.65 55.0 3.29e-01 92.2% 74.7%
4935741 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.65 51.0 4.48e-01 85.7% 73.9%
4059480 881.1.1.37 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF27270 0.64 59.0 4.45e-01 100.0% 59.4%
3609368 77.1.1.3 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_DRC7 0.63 47.0 3.38e-01 77.9% 35.2%
3967227 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.63 49.0 3.73e-01 83.1% 60.6%
3699608 77.1.1.3 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_DRC7 0.63 47.0 3.90e-01 77.9% 53.1%
3243612 708.1.1.18 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DUF7747 0.63 57.0 4.33e-01 100.0% 69.1%
3212938 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.63 48.0 3.29e-01 83.1% 39.6%
5002542 12.3.1.74 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GDE_N 0.63 55.0 3.76e-01 97.4% 80.4%
4366777 5.1.5.205 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF27482 0.63 49.0 3.14e-01 84.4% 20.0%
3833269 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.62 49.0 3.28e-01 84.4% 29.3%
3187947 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.62 49.0 3.04e-01 84.4% 27.1%
3252404 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.62 52.0 4.86e-01 98.7% 74.7%
3995113 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.62 53.0 4.93e-01 100.0% 75.8%
3402616 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.62 50.0 4.04e-01 88.3% 58.7%
4995993 325.1.6.9 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PF26482 0.61 54.0 4.66e-01 100.0% 80.8%
3421095 3521.1.1.4 a+b three layers › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain › SWIM 0.61 42.0 4.03e-01 96.1% 61.1%
3509038 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.61 50.0 4.60e-01 100.0% 71.0%
3445272 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 47.0 3.02e-01 83.1% 19.7%
3269530 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.60 54.0 4.16e-01 100.0% 44.6%
3431244 5.1.4.122 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 0.60 47.0 3.09e-01 85.7% 23.2%
3252046 316.1.1.56 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.60 50.0 3.57e-01 92.2% 64.7%
3643256 708.1.1.9 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › CG-1 0.60 54.0 4.57e-01 100.0% 71.2%
3964085 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.60 52.0 4.47e-01 100.0% 75.4%
3993127 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 46.0 2.82e-01 83.1% 20.4%
4292366 9.1.1.14 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.59 53.0 4.02e-01 100.0% 75.5%
3393233 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 45.0 3.11e-01 83.1% 31.4%
5048994 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 41.0 3.55e-01 71.4% 99.2%
4240482 5.1.4.298 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.57 44.0 2.76e-01 83.1% 24.8%
164598 331.15.1.1 a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 › DUF1374 0.57 50.0 4.50e-01 98.7% 82.4%
365513 331.15.1.1 a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 › DUF1374 0.56 50.0 4.58e-01 98.7% 88.9%
3737480 5.1.7.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.56 43.0 2.64e-01 84.4% 16.7%
2769360 719.1.1.4 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › SAS-6_N 0.55 41.0 4.18e-01 80.5% 100.0%
3677326 316.1.1.36 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.55 45.0 3.79e-01 93.5% 63.6%
3621630 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.55 49.0 3.15e-01 100.0% 89.4%
3548879 101.1.2.125 alpha arrays › HTH › HTH › winged helix domain › ELL 0.55 41.0 3.78e-01 81.8% 95.2%
3579354 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 47.0 4.23e-01 100.0% 70.9%
3850090 4099.1.1.19 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM8 0.53 45.0 3.75e-01 98.7% 52.9%
3760199 331.2.1.6 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › Med14_RM8 0.53 39.0 3.70e-01 81.8% 89.0%
5065111 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.53 44.0 3.41e-01 100.0% 53.8%
3264731 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.52 39.0 3.37e-01 81.8% 60.0%
3266531 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.52 47.0 3.64e-01 98.7% 86.7%
5075254 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 45.0 3.44e-01 96.1% 92.8%
5794 295.1.1.7 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › MRP 0.51 42.0 3.44e-01 93.5% 65.6%
3698579 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 39.0 3.41e-01 80.5% 84.5%
4971610 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 38.0 3.32e-01 85.7% 94.6%
3599526 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.50 42.0 2.89e-01 97.4% 50.6%
D2 medium residues 103-133
PDB