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NC_008562.1__YP_851125.1__MaLMM01_gp111__00111

Bact-Vir

NC_008562.1__YP_851125.1__MaLMM01_gp111__00111

Identity

Accession:
NC_008562 ↗
Kingdom:
phage

Quality

66.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 131-196
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 52.0 4.24e-01 71.2% 77.0%
7ep3A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.73 64.0 4.38e-01 100.0% 31.0%
3ut4A00 1.25.40.750 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Domain of unknown function DUF5071 0.72 63.0 5.13e-01 100.0% 52.3%
4c9bB00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.71 62.0 4.08e-01 100.0% 24.5%
7ep1B01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.70 61.0 4.20e-01 100.0% 30.6%
7p5hB03 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.69 56.0 5.12e-01 89.4% 68.5%
3o4zA02 1.25.40.720 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tel2 C-terminal domain 0.69 59.0 4.32e-01 100.0% 40.7%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.69 55.0 4.68e-01 87.9% 84.5%
1zvwA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.69 57.0 5.71e-01 92.4% 90.9%
3b34A05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.69 60.0 3.80e-01 97.0% 22.8%
3cf6E03 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.68 55.0 4.52e-01 93.9% 64.9%
5xfaA04 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.67 53.0 4.97e-01 89.4% 69.4%
5cmyA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 57.0 4.52e-01 100.0% 83.8%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.66 44.0 4.33e-01 71.2% 89.2%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.65 50.0 5.06e-01 92.4% 83.6%
1uouA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.65 54.0 5.42e-01 92.4% 91.2%
1hu3A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 55.0 3.96e-01 100.0% 35.8%
4gtnA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.64 52.0 5.08e-01 92.4% 81.1%
4ga6A02 1.20.970.50 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › 0.63 56.0 4.29e-01 100.0% 48.0%
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.63 49.0 4.57e-01 87.9% 68.2%
1vquA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.62 51.0 5.14e-01 92.4% 89.6%
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.62 48.0 4.42e-01 89.4% 70.2%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 45.0 4.62e-01 97.0% 85.2%
5z7qA00 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.62 49.0 3.66e-01 87.9% 55.7%
4ga4A01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.61 53.0 5.28e-01 97.0% 95.5%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.61 47.0 4.58e-01 87.9% 86.7%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.61 52.0 5.16e-01 97.0% 91.4%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.57 45.0 3.74e-01 89.4% 57.1%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 49.0 3.91e-01 100.0% 59.0%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.57 44.0 3.87e-01 89.4% 65.5%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.57 45.0 3.92e-01 89.4% 62.0%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.56 43.0 3.70e-01 89.4% 65.0%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.55 44.0 3.68e-01 89.4% 58.8%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 42.0 4.29e-01 81.8% 88.7%
2wg7A00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.55 42.0 3.56e-01 87.9% 53.7%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 39.0 3.02e-01 78.8% 89.8%
3zssA02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.52 41.0 3.94e-01 87.9% 84.8%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3771203 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.76 68.0 4.33e-01 100.0% 29.5%
4623044 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.73 65.0 3.96e-01 100.0% 22.8%
3349579 109.2.1.7 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Terpene_synth 0.73 65.0 4.88e-01 98.5% 71.6%
4023613 109.4.1.900 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GNC1_N 0.72 64.0 4.15e-01 100.0% 36.9%
4493280 109.4.1.130 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PHAT 0.72 63.0 5.20e-01 100.0% 72.5%
3647808 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 62.0 5.25e-01 100.0% 69.6%
2462397 109.4.1.1773 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, HEAT_IPO9_c, TPR_IPO11 0.71 62.0 4.08e-01 100.0% 44.1%
2669383 109.4.1.241 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3458_C 0.71 64.0 3.99e-01 100.0% 22.4%
3276039 109.4.1.1670 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30847 0.70 62.0 4.05e-01 100.0% 27.0%
4015549 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 60.0 3.73e-01 100.0% 19.3%
4569984 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.69 59.0 3.64e-01 98.5% 20.7%
3571953 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 61.0 4.09e-01 100.0% 31.8%
3886266 109.4.1.1532 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › LINES_N, LINES_C 0.69 61.0 3.61e-01 100.0% 19.7%
3311084 109.4.1.1191 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_LIN_C 0.69 60.0 4.12e-01 100.0% 50.4%
3747704 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.68 60.0 4.77e-01 100.0% 83.7%
3259233 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 60.0 3.44e-01 100.0% 13.0%
3243046 109.4.1.1952 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19, PF30475 0.68 59.0 3.93e-01 100.0% 28.3%
3723602 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.66 57.0 3.68e-01 100.0% 60.3%
3688370 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 56.0 3.36e-01 100.0% 21.1%
3272531 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 58.0 3.73e-01 100.0% 23.2%
3498448 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.66 52.0 4.94e-01 89.4% 87.5%
4681371 184.1.1.1 alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.66 53.0 5.25e-01 92.4% 84.3%
3707093 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 57.0 4.10e-01 100.0% 49.0%
3654291 109.4.1.1670 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30847 0.65 57.0 3.60e-01 100.0% 21.7%
3240575 4266.2.1.0 alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like 0.65 55.0 4.51e-01 95.5% 75.2%
3680700 109.4.1.1127 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_Cnot1 0.65 58.0 4.11e-01 100.0% 34.0%
4029180 4984.1.1.0 alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain 0.65 50.0 3.84e-01 84.8% 83.1%
3492234 109.4.1.548 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIP120 0.65 56.0 3.44e-01 100.0% 21.2%
4076215 184.1.1.1 alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.65 54.0 5.32e-01 90.9% 85.7%
None 0.65 55.0 3.73e-01 100.0% 24.4%
3913629 184.1.1.1 alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.65 54.0 5.07e-01 92.4% 77.5%
3453024 109.4.1.1670 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30847 0.65 56.0 3.63e-01 100.0% 25.2%
5054392 184.1.1.1 alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.64 53.0 5.29e-01 92.4% 88.6%
3288268 184.1.1.1 alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.64 53.0 5.28e-01 92.4% 87.1%
4405099 184.1.1.1 alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.64 53.0 5.24e-01 90.9% 87.1%
3639402 109.4.1.32 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.63 53.0 3.46e-01 100.0% 23.0%
3756535 604.1.1.5 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_3 0.63 50.0 4.23e-01 89.4% 75.7%
4385598 184.1.1.1 alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.63 51.0 5.13e-01 92.4% 90.8%
3618291 109.4.1.661 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT11 0.62 52.0 3.92e-01 100.0% 44.3%
3691752 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 53.0 3.67e-01 100.0% 40.8%
3524431 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 49.0 4.05e-01 89.4% 70.4%
2988820 109.8.1.1 alpha superhelices › Repetitive alpha hairpins › Arp2/3 complex 16 KDa subunit ARPC5 › Arp2/3 complex 16 KDa subunit ARPC5 › P16-Arc 0.61 52.0 4.12e-01 100.0% 55.0%
5038858 184.1.1.1 alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.61 49.0 4.97e-01 92.4% 92.3%
4355361 184.1.1.1 alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.61 50.0 4.97e-01 92.4% 87.1%
3833474 611.3.1.0 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.60 52.0 4.62e-01 100.0% 71.0%
5000247 184.1.1.0 alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N 0.60 50.0 5.08e-01 97.0% 96.9%
3712159 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.60 46.0 3.65e-01 89.4% 51.0%
3576287 109.4.1.1159 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IFT122 0.59 51.0 4.00e-01 100.0% 42.6%
3740779 604.12.1.2 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.59 47.0 4.57e-01 89.4% 82.7%
5038668 4266.2.1.0 alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like 0.58 50.0 4.55e-01 100.0% 80.0%
3499235 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 49.0 3.42e-01 100.0% 71.7%
5011899 5082.1.1.1 alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.56 45.0 3.31e-01 89.4% 74.7%
4977760 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.53 43.0 3.67e-01 97.0% 90.8%
D2 high residues 237-323_337-424
PDB
D3 high residues 433-525
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.59 43.0 3.00e-01 77.4% 37.8%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 42.0 2.69e-01 78.5% 99.8%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 2.86e-01 83.9% 100.0%
3fh1A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 3.69e-01 75.3% 61.5%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 38.0 2.98e-01 72.0% 95.6%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.55 41.0 3.52e-01 80.6% 79.7%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 41.0 3.47e-01 80.6% 91.4%
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 37.0 4.08e-01 78.5% 85.5%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 3.51e-01 73.1% 58.9%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.58e-01 81.7% 76.1%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.04e-01 78.5% 82.6%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.58e-01 78.5% 57.0%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 34.0 3.63e-01 74.2% 74.1%
8ainB01 3.10.450.250 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor 0.53 38.0 3.67e-01 77.4% 65.7%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 40.0 3.35e-01 79.6% 59.5%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 37.0 3.44e-01 73.1% 62.5%
6kjuB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 40.0 3.76e-01 83.9% 100.0%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 36.0 3.51e-01 72.0% 84.8%
2e1qC08 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.52 39.0 3.30e-01 81.7% 71.8%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.52 40.0 3.26e-01 84.9% 77.2%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.32e-01 75.3% 64.9%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 36.0 2.61e-01 76.3% 96.4%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.50 36.0 3.07e-01 75.3% 81.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3445705 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 40.0 4.55e-01 74.2% 81.4%
3671149 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 45.0 2.97e-01 71.0% 50.5%
4014366 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 46.0 3.06e-01 73.1% 34.4%
3265309 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.64 50.0 4.30e-01 83.9% 70.1%
682 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.63 38.0 3.81e-01 73.1% 57.9%
3810743 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 44.0 3.22e-01 74.2% 35.9%
3247128 2484.1.1.190 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.61 50.0 3.71e-01 90.3% 95.7%
3268050 7525.1.1.2 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.61 43.0 2.81e-01 72.0% 95.1%
5002402 3153.1.1.0 a+b two layers › PipX › PipX › PipX 0.61 40.0 4.34e-01 71.0% 82.7%
4991900 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.61 40.0 2.63e-01 84.9% 16.1%
3904275 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.60 45.0 2.81e-01 78.5% 99.6%
3938509 5.1.4.304 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.58 43.0 2.92e-01 77.4% 29.8%
3629963 330.1.1.6 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.57 39.0 3.90e-01 71.0% 83.8%
3898586 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.57 44.0 2.85e-01 82.8% 98.7%
4017127 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 43.0 3.06e-01 80.6% 43.6%
4368436 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.57 41.0 2.92e-01 76.3% 79.7%
3752886 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 39.0 3.77e-01 71.0% 69.5%
5059043 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 39.0 2.67e-01 73.1% 31.9%
4031999 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 39.0 4.12e-01 73.1% 80.0%
3915628 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.55 41.0 2.63e-01 78.5% 97.1%
3543887 330.1.1.6 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.55 38.0 3.77e-01 72.0% 72.0%
5042381 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.55 45.0 2.92e-01 88.2% 20.8%
3897197 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.54 45.0 2.85e-01 91.4% 99.6%
4029890 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 40.0 2.77e-01 78.5% 97.5%
3287567 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.52 39.0 4.03e-01 81.7% 86.7%
3249804 868.1.1.3 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.52 37.0 2.98e-01 75.3% 45.6%
D4 medium residues 1-129
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5vjcA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 47.0 3.77e-01 75.2% 63.0%
3k49A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 49.0 3.54e-01 78.3% 42.5%
5bz1A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 50.0 3.58e-01 81.4% 48.8%
3zilA00 1.25.10.60 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Rad61, Wapl domain 0.63 47.0 3.44e-01 79.1% 55.0%
4u2xF00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 43.0 3.95e-01 72.1% 92.6%
7cgfA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.60 50.0 3.63e-01 86.8% 48.7%
3tjzB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.60 46.0 3.67e-01 81.4% 45.8%
3hr0A02 1.20.58.1970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 41.0 3.77e-01 70.5% 82.9%
7zb5E01 3.40.50.10810 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain 0.58 47.0 3.61e-01 87.6% 78.0%
4gzcA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 44.0 4.39e-01 81.4% 100.0%
4wz9A04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.56 46.0 3.44e-01 88.4% 52.8%
2ii2A03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.55 35.0 3.93e-01 78.3% 83.7%
2b6cA02 1.25.40.290 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains 0.54 38.0 4.28e-01 72.9% 95.9%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 41.0 3.46e-01 82.2% 81.5%
4ayoA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.53 43.0 3.04e-01 87.6% 69.6%
7zcvA02 1.25.40.400 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 44.0 3.80e-01 91.5% 99.5%
2xqyA02 1.20.58.1340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 38.0 3.70e-01 75.2% 79.0%
1fmiA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.52 42.0 2.97e-01 89.9% 48.0%
1owlA03 1.10.579.10 Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.52 33.0 3.04e-01 76.7% 47.2%
2wtbA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.51 42.0 3.33e-01 91.5% 91.8%
3p5pA02 1.50.10.160 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.51 39.0 3.37e-01 79.8% 75.7%
3eapD00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.51 38.0 3.26e-01 79.8% 77.4%
3mcpA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 37.0 3.11e-01 78.3% 73.0%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3822698 109.4.1.616 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FANCI_S1,FANCI_S2,FANCI_HD1,FANCI_HD2 0.68 53.0 3.06e-01 80.6% 19.8%
4003385 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 52.0 3.43e-01 82.9% 47.6%
3812457 109.4.1.853 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › AP5B1_middle 0.64 48.0 3.08e-01 79.1% 33.1%
3274316 109.4.1.509 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT 0.64 48.0 3.72e-01 78.3% 89.1%
3706894 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 51.0 2.96e-01 84.5% 13.6%
3828699 109.4.1.313 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_N 0.63 50.0 3.23e-01 84.5% 31.8%
3274116 109.4.1.493 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Noc2 0.63 54.0 3.53e-01 90.7% 50.2%
3719227 109.4.1.623 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd1 0.62 47.0 3.27e-01 79.1% 55.0%
3737232 109.4.1.16 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF 0.62 51.0 3.59e-01 87.6% 84.4%
3468670 109.4.1.3 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm,Arm_3 0.62 44.0 3.72e-01 72.9% 74.9%
3772587 109.4.1.1403 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TBCD, ARM_TBCD_2nd 0.61 47.0 3.48e-01 80.6% 46.1%
3200033 109.4.1.2268 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28359 0.61 51.0 4.20e-01 90.7% 73.2%
3620407 109.4.1.1350 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG, SCD, HEAT_SCC3-SA, PF31007 0.60 48.0 2.82e-01 84.5% 47.5%
3398541 109.4.1.1492 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_SCC3-SA, PF31007 0.60 49.0 3.35e-01 86.0% 67.3%
3173901 109.4.1.509 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT 0.60 50.0 3.30e-01 89.1% 79.2%
3504399 109.4.1.1350 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG, SCD, HEAT_SCC3-SA, PF31007 0.60 49.0 2.93e-01 89.1% 74.1%
3585151 109.4.1.913 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TBCD 0.60 49.0 3.74e-01 87.6% 67.7%
3678902 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 51.0 4.21e-01 89.9% 83.2%
3550397 109.4.1.409 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm,IBB,Arm_3 0.60 45.0 3.37e-01 79.8% 51.0%
3935918 109.4.1.645 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BLM10_mid 0.59 49.0 4.12e-01 89.9% 82.2%
3628898 109.4.1.1413 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28415 0.59 47.0 3.55e-01 87.6% 59.7%
3166742 109.4.1.460 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_C 0.58 43.0 3.79e-01 78.3% 87.5%
3724045 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 43.0 3.90e-01 78.3% 92.2%
3595808 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 46.0 2.83e-01 83.7% 70.6%
3988788 109.4.1.275 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rgg_C 0.57 43.0 3.68e-01 78.3% 72.7%
3998266 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 45.0 4.40e-01 84.5% 89.7%
3555039 109.4.1.1765 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF31007 0.56 40.0 3.98e-01 80.6% 70.4%
4817097 109.4.1.79 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Bystin 0.56 43.0 4.04e-01 82.9% 77.4%
3232180 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 46.0 3.85e-01 89.1% 70.2%
3630017 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 41.0 3.44e-01 77.5% 88.7%
3580692 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.55 43.0 3.51e-01 82.2% 79.4%
4022856 109.4.1.471 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GCFC 0.54 45.0 3.69e-01 89.9% 74.0%
3423594 109.4.1.1277 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 0.53 42.0 3.40e-01 83.7% 64.0%
3600838 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 43.0 3.00e-01 88.4% 34.1%
2875331 109.4.1.275 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rgg_C 0.53 45.0 3.83e-01 93.8% 98.1%
4049706 109.4.1.275 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rgg_C 0.52 44.0 3.73e-01 92.2% 97.7%
1487485 109.4.1.275 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rgg_C 0.52 43.0 3.65e-01 90.7% 96.4%
3876261 627.1.1.1 alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 0.51 41.0 3.78e-01 88.4% 84.6%