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NC_008562.1__YP_851137.1__MaLMM01_gp123__00123

Bact-Vir

NC_008562.1__YP_851137.1__MaLMM01_gp123__00123

Identity

Accession:
NC_008562 ↗
Kingdom:
phage

Quality

57.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fukuivirus› Microcystis_phage_LMM01

TaxID: 2856824

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-61_126-182
PDB
D2 medium residues 62-125
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 54.0 5.90e-01 87.5% 90.2%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 51.0 5.17e-01 78.1% 68.3%
1k78I00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 55.0 5.78e-01 79.7% 100.0%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 51.0 5.14e-01 81.2% 76.6%
3lapA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 5.46e-01 84.4% 95.6%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.70 51.0 5.67e-01 78.1% 100.0%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 4.31e-01 82.8% 46.4%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 52.0 4.10e-01 89.1% 79.7%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 54.0 5.15e-01 96.9% 82.1%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 47.0 5.24e-01 84.4% 100.0%
3dpuA03 1.10.10.2200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 48.0 4.67e-01 85.9% 74.7%
1o82A00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.62 49.0 4.83e-01 90.6% 91.4%
3e3rB01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 52.0 4.74e-01 93.8% 100.0%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 47.0 3.76e-01 90.6% 84.3%
1usgA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 45.0 3.27e-01 90.6% 81.1%
2ew2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 40.0 3.32e-01 81.2% 56.7%
5e37A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 38.0 3.49e-01 73.4% 73.3%
3qybA01 1.10.10.2750 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 36.0 3.48e-01 73.4% 93.1%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3692027 101.1.2.480 ↗ alpha arrays › HTH › HTH › winged helix domain › Clr5 0.86 65.0 7.02e-01 81.2% 92.7%
4008778 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.83 60.0 6.43e-01 81.2% 87.3%
3878549 101.1.2.536 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.83 63.0 6.78e-01 81.2% 96.4%
3887965 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.83 63.0 6.77e-01 81.2% 96.4%
4945040 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 60.0 6.24e-01 81.2% 83.3%
4014657 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 63.0 6.72e-01 81.2% 96.4%
3198858 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 63.0 6.16e-01 84.4% 81.4%
5079733 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 61.0 5.79e-01 87.5% 70.7%
3899987 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.79 62.0 5.60e-01 84.4% 64.7%
4946654 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 61.0 6.27e-01 84.4% 88.3%
3909938 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.79 65.0 5.74e-01 89.1% 76.7%
3590551 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.77 56.0 6.16e-01 81.2% 98.0%
3934874 101.1.1.396 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Arg_repressor 0.77 57.0 6.09e-01 84.4% 90.9%
3408723 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.77 64.0 5.81e-01 90.6% 87.1%
4103293 101.1.2.62 ↗ alpha arrays › HTH › HTH › winged helix domain › Sigma54_DBD 0.76 58.0 5.35e-01 79.7% 95.0%
3983493 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.76 56.0 6.24e-01 79.7% 100.0%
5044657 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 61.0 6.30e-01 89.1% 91.7%
4944585 101.1.2.872 ↗ alpha arrays › HTH › HTH › winged helix domain › rve 0.76 59.0 6.15e-01 84.4% 90.0%
3984964 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.74 58.0 5.52e-01 84.4% 76.0%
3724068 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 54.0 5.73e-01 81.2% 92.7%
3982775 101.1.1.202 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.73 58.0 5.95e-01 84.4% 91.7%
3380070 101.43.1.3 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › PF26175 0.73 55.0 5.69e-01 81.2% 93.3%
5040994 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 60.0 5.67e-01 89.1% 76.0%
4182885 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 55.0 5.56e-01 84.4% 81.5%
3956565 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.72 56.0 5.15e-01 84.4% 67.1%
3504540 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.72 54.0 5.74e-01 82.8% 94.5%
4996226 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.71 55.0 4.73e-01 85.9% 53.0%
5022630 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.71 58.0 3.82e-01 90.6% 25.2%
3890613 101.1.2.698 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27079 0.71 52.0 5.21e-01 81.2% 76.9%
3519342 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.71 55.0 5.82e-01 84.4% 96.4%
4938633 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 55.0 4.32e-01 85.9% 43.0%
4950639 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 53.0 3.96e-01 89.1% 34.8%
3707222 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 48.0 5.05e-01 82.8% 94.5%
3642684 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.62 44.0 4.26e-01 73.4% 87.1%
3510210 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.62 45.0 4.06e-01 78.1% 74.4%
4530493 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.62 42.0 4.14e-01 71.9% 78.6%
3550218 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.61 50.0 4.61e-01 92.2% 100.0%
3328627 5067.1.1.12 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › UPF0014 0.60 44.0 3.06e-01 81.2% 70.8%
3420661 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.60 45.0 4.19e-01 82.8% 65.9%
3217642 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.58 41.0 3.87e-01 73.4% 78.8%
4281784 108.1.1.104 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_8 0.58 41.0 3.79e-01 75.0% 78.8%
3769569 1091.1.1.0 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.58 45.0 4.53e-01 89.1% 93.8%
3510147 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.58 42.0 4.13e-01 78.1% 94.2%
3706039 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.57 41.0 3.98e-01 78.1% 90.7%
3250611 101.1.2.306 ↗ alpha arrays › HTH › HTH › winged helix domain › NPR2 0.56 43.0 4.19e-01 89.1% 81.3%
3815826 108.1.1.100 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7, EF-hand_8 0.55 44.0 3.78e-01 90.6% 89.1%
3402132 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 44.0 4.11e-01 92.2% 97.5%
4861709 2004.1.1.41 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK 0.51 38.0 3.22e-01 82.8% 82.6%
D3 medium residues 183-236
PDB