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NC_008562.1__YP_851195.1__MaLMM01_gp181__00181

Bact-Vir

NC_008562.1__YP_851195.1__MaLMM01_gp181__00181

Identity

Accession:
NC_008562 ↗
Kingdom:
phage

Quality

80.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fukuivirus› Microcystis_phage_LMM01

TaxID: 2856824

Cluster

View cluster (115 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 21-197
PDB
Domain cluster: rep: NC_048804.1__YP_009851087.1__HWC60_gp030__00030__D44-182
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00692.25 best dUTPase 24.2 3.30e-05 46.3% 45.0%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sixA00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.94 57.0 6.18e-01 100.0% 71.2%
1euwA00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.92 57.0 6.58e-01 100.0% 81.6%
1dunA00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.90 53.0 6.55e-01 100.0% 88.3%
2d4lA01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.89 50.0 6.59e-01 97.2% 94.3%
5y5qC00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.89 54.0 6.14e-01 100.0% 77.9%
3ecyA00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.88 48.0 5.85e-01 98.3% 80.7%
2bsyA02 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.86 48.0 6.32e-01 96.6% 96.1%
3h6xB00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.86 55.0 6.41e-01 100.0% 87.7%
4ao5B01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.85 49.0 6.13e-01 97.2% 88.0%
3t64A01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.78 50.0 5.68e-01 97.2% 83.3%
6lj3A01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.76 47.0 5.24e-01 97.2% 76.8%
2yzjA01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.75 51.0 5.78e-01 97.2% 87.9%
3zf0A00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.74 52.0 5.77e-01 100.0% 85.9%
4xjcF00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.74 53.0 5.44e-01 99.4% 76.3%
3km3B00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.73 50.0 5.39e-01 96.0% 79.5%
2bsyA01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.73 42.0 4.65e-01 97.7% 69.4%
2r9qC01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.68 51.0 5.38e-01 97.7% 84.7%
1pkhB00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.66 55.0 5.60e-01 99.4% 87.4%
1xs1A00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.65 53.0 5.16e-01 99.4% 76.7%
2r9qA02 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.63 50.0 5.25e-01 99.4% 89.0%
3l5hA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 29.0 4.03e-01 99.4% 94.9%
3e9tB00 2.60.40.2030 Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain 0.60 32.0 3.93e-01 97.2% 80.5%
4n5uA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 30.0 3.62e-01 93.2% 73.1%
1bdyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.60 28.0 3.36e-01 88.7% 62.6%
3fq4B01 2.60.40.2030 Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain 0.58 32.0 3.84e-01 91.0% 79.3%
3j4uH00 2.60.120.1110 Mainly Beta › Sandwich › Jelly Rolls › 0.58 34.0 3.82e-01 97.2% 72.1%
2dpkA01 2.60.40.2030 Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain 0.57 32.0 3.82e-01 92.7% 79.2%
6lcqA00 3.30.30.10 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like 0.56 15.0 2.71e-01 94.9% 70.4%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.56 35.0 4.00e-01 98.3% 84.0%
4i0wA00 3.30.70.2980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 26.0 3.46e-01 83.6% 83.7%
5mw8A01 3.30.200.110 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Inositol-pentakisphosphate 2-kinase, N-lobe 0.55 24.0 2.96e-01 85.9% 61.4%
4jqrA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.54 35.0 3.28e-01 97.2% 50.9%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.54 32.0 3.76e-01 91.5% 85.3%
4zrxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 31.0 3.89e-01 97.7% 96.2%
2bgoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 35.0 4.15e-01 91.0% 100.0%
7mjrA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 33.0 3.81e-01 97.2% 85.5%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.52 25.0 3.25e-01 94.4% 81.1%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 27.0 3.55e-01 92.1% 98.8%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.52 32.0 3.93e-01 96.0% 100.0%
2mcmA00 2.60.40.230 Mainly Beta › Sandwich › Immunoglobulin-like › Neocarzinostatin-like 0.51 30.0 3.62e-01 96.6% 89.3%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4147159 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.94 57.0 6.89e-01 100.0% 87.2%
2709093 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.93 55.0 6.05e-01 100.0% 70.7%
4656379 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.93 55.0 6.39e-01 100.0% 78.5%
4599976 70.2.1.0 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.93 57.0 6.49e-01 100.0% 78.6%
4130984 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.93 58.0 6.28e-01 100.0% 72.7%
4876557 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.93 57.0 6.42e-01 100.0% 77.9%
3625168 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.93 54.0 6.82e-01 98.9% 90.4%
27204 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.93 57.0 6.57e-01 100.0% 81.3%
4664979 70.2.1.0 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.93 58.0 6.78e-01 100.0% 85.4%
4014287 70.2.1.0 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.93 55.0 6.38e-01 100.0% 79.1%
4162544 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.92 55.0 5.98e-01 100.0% 70.7%
2534305 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.91 57.0 6.25e-01 100.0% 75.0%
2793462 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.91 54.0 6.46e-01 100.0% 83.5%
27230 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.90 53.0 6.58e-01 100.0% 89.1%
4862744 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.89 58.0 6.70e-01 100.0% 87.1%
162469 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.89 53.0 6.63e-01 100.0% 92.1%
4966568 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.87 51.0 5.73e-01 99.4% 73.6%
4995632 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.86 54.0 6.05e-01 100.0% 79.3%
224649 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.86 52.0 5.83e-01 100.0% 75.5%
3590216 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.85 55.0 6.04e-01 100.0% 77.3%
4059745 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.85 57.0 6.64e-01 99.4% 90.4%
5032029 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.83 50.0 5.27e-01 99.4% 66.3%
1247195 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.83 49.0 5.63e-01 100.0% 77.2%
5049748 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.83 58.0 6.27e-01 100.0% 81.9%
5035269 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.82 49.0 5.15e-01 99.4% 64.2%
4080854 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.80 53.0 5.73e-01 99.4% 78.7%
1170967 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.79 50.0 5.42e-01 97.2% 74.5%
5062200 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.77 51.0 5.36e-01 100.0% 72.0%
4967931 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.75 53.0 5.56e-01 100.0% 79.4%
367299 70.2.1.0 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.74 43.0 5.40e-01 100.0% 91.1%
4935769 70.2.1.6 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DUF22 0.74 41.0 5.34e-01 94.4% 96.0%
999206 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.73 52.0 5.53e-01 99.4% 81.0%
5056309 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.73 52.0 5.51e-01 99.4% 80.6%
5042019 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.73 54.0 5.58e-01 99.4% 80.6%
4048458 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.72 52.0 5.30e-01 99.4% 75.9%
4041362 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.71 52.0 5.50e-01 100.0% 83.0%
5022441 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.71 52.0 5.57e-01 99.4% 85.7%
4629365 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.71 54.0 5.16e-01 99.4% 69.3%
3960338 70.2.1.0 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.70 54.0 5.28e-01 99.4% 73.2%
None — 0.70 52.0 5.26e-01 100.0% 76.0%
5054511 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.70 51.0 5.19e-01 98.9% 75.4%
None — 0.69 54.0 5.29e-01 99.4% 74.1%
None — 0.69 53.0 5.11e-01 99.4% 71.3%
5002855 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.69 52.0 5.27e-01 99.4% 78.6%
4937229 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.69 53.0 5.15e-01 99.4% 72.3%
3256286 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.69 53.0 5.42e-01 99.4% 81.0%
5068130 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.68 52.0 5.29e-01 99.4% 78.9%
4997594 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.68 50.0 5.27e-01 99.4% 81.7%
4984664 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.68 51.0 5.10e-01 99.4% 75.0%
4993749 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.68 52.0 5.19e-01 99.4% 76.7%
5031214 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.67 53.0 5.14e-01 99.4% 75.3%
4312625 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.67 55.0 5.25e-01 99.4% 74.6%
None — 0.66 55.0 5.30e-01 99.4% 76.5%
None — 0.66 55.0 5.30e-01 99.4% 76.5%
5064841 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.66 52.0 5.08e-01 99.4% 73.8%
4372720 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.66 55.0 5.28e-01 99.4% 76.5%
None — 0.66 52.0 5.16e-01 99.4% 78.9%
3271362 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.66 51.0 4.92e-01 99.4% 71.0%
4052918 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.66 53.0 5.14e-01 99.4% 75.9%
None — 0.65 53.0 5.13e-01 99.4% 75.9%
None — 0.62 51.0 5.03e-01 100.0% 79.5%
5067824 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.62 52.0 4.97e-01 99.4% 75.6%
4075672 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.62 51.0 4.99e-01 100.0% 78.9%
4136503 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.62 51.0 4.98e-01 100.0% 78.9%
5078680 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.62 51.0 5.27e-01 100.0% 90.9%
4929207 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 29.0 3.83e-01 92.7% 84.1%
2709083 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.58 47.0 4.92e-01 100.0% 90.2%
1421 11.1.1.43 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Flavi_glycop_C 0.57 30.0 3.58e-01 90.4% 74.8%
5057529 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 38.0 4.18e-01 92.7% 84.3%
5033261 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 36.0 3.95e-01 92.7% 83.6%
5031633 304.8.1.118 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › TruB_C_2 0.52 31.0 3.33e-01 87.6% 67.3%