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NC_008720.1__YP_950511.1__EPNV4_gp33__00033

Bact-Vir

NC_008720.1__YP_950511.1__EPNV4_gp33__00033

Identity

Accession:
NC_008720 ↗
Kingdom:
phage

Quality

83.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-214
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13589.13 best HATPase_c_3 31.8 1.90e-07 74.2% 80.3%
D2 high residues 687-837
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ofyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 22.0 3.05e-01 76.8% 78.6%
3cl3A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.51 23.0 3.02e-01 79.5% 75.0%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 33.0 3.80e-01 100.0% 94.4%
D3 medium residues 220-412
PDB
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6tmfL00 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.59 31.0 3.70e-01 79.8% 73.5%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 27.0 3.57e-01 75.1% 82.2%
4dyqA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 29.0 3.85e-01 81.3% 95.1%
4kc9A02 1.20.120.1750 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 31.0 3.03e-01 78.8% 52.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3733141 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.60 27.0 3.15e-01 94.8% 54.5%
4456477 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.52 28.0 2.95e-01 76.2% 53.7%
4618205 604.1.1.150 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.52 27.0 3.31e-01 74.6% 77.5%
3506336 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.50 24.0 2.95e-01 100.0% 69.6%
D4 medium residues 413-577
PDB
Domain cluster: representative
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5041715 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 25.0 2.98e-01 98.2% 59.1%
3790774 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 30.0 3.51e-01 73.3% 77.5%
5050494 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 37.0 4.11e-01 77.6% 92.3%
5001220 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.51 33.0 3.70e-01 87.9% 84.0%
3968086 2007.13.1.1 a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domains in magnesium chelatase catalytic subunit › Rossmann-like domains in magnesium chelatase catalytic subunit › CobN-Mg_chel 0.50 36.0 3.40e-01 73.3% 87.0%