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NC_008720.1__YP_950550.1__EPNV4_gp72__00072

Bact-Vir

NC_008720.1__YP_950550.1__EPNV4_gp72__00072

Identity

Accession:
NC_008720 ↗
Kingdom:
phage

Quality

94.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Enquatrovirus› Escherichia_phage_N4

TaxID: 2886925

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-41
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.75 63.0 4.60e-01 100.0% 77.8%
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.75 55.0 5.40e-01 82.5% 81.8%
2yweA04 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 52.0 3.73e-01 100.0% 28.1%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.64 50.0 4.54e-01 95.0% 90.3%
3d2wA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.63 50.0 4.21e-01 92.5% 95.8%
3w3sA01 3.30.70.1920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 50.0 3.43e-01 100.0% 55.4%
3rbyA02 2.40.128.310 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain 0.60 48.0 3.85e-01 100.0% 95.8%
4iufA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 46.0 3.80e-01 87.5% 93.5%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.57 43.0 4.24e-01 95.0% 82.6%
6hoyA02 2.20.28.200 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.57 42.0 4.13e-01 95.0% 85.7%
4erdA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 41.0 3.30e-01 97.5% 71.3%
6hxiA01 3.30.470.110 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.54 44.0 2.89e-01 100.0% 22.1%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 42.0 3.95e-01 97.5% 75.0%
2j8gA02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.52 39.0 3.24e-01 95.0% 43.9%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.23e-01 97.5% 74.2%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3243669 4076.2.1.0 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like 0.80 67.0 5.93e-01 97.5% 73.3%
3473704 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 64.0 5.16e-01 100.0% 90.6%
3616027 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.76 64.0 4.68e-01 100.0% 85.2%
3703442 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 62.0 5.05e-01 100.0% 90.6%
4995054 284.4.1.1 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.75 58.0 5.83e-01 85.0% 95.0%
3936038 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.75 63.0 4.67e-01 100.0% 80.5%
3596847 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 61.0 4.67e-01 100.0% 79.0%
3243787 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 62.0 4.89e-01 100.0% 90.0%
3243776 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.74 61.0 4.57e-01 100.0% 86.4%
3415886 220.1.1.146 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NDK7_N 0.73 59.0 4.83e-01 100.0% 90.6%
4890857 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 58.0 4.75e-01 100.0% 89.4%
3179717 9.14.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W 0.72 58.0 4.16e-01 92.5% 100.0%
5029540 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.72 59.0 4.05e-01 100.0% 34.4%
5028312 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.70 60.0 4.14e-01 100.0% 37.9%
3436557 220.4.1.8 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › ZGRF1-like_N 0.70 56.0 4.66e-01 95.0% 98.7%
5070047 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.67 52.0 4.77e-01 95.0% 93.3%
3436556 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.67 54.0 4.60e-01 100.0% 98.7%
5080769 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.66 53.0 4.77e-01 95.0% 93.3%
5083631 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.65 51.0 4.35e-01 95.0% 74.7%
5040738 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.64 50.0 4.58e-01 95.0% 98.3%
5025277 284.1.1.13 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP-like_N 0.64 51.0 4.70e-01 92.5% 96.4%
4956032 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.64 51.0 4.68e-01 100.0% 70.0%
5059211 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.63 50.0 4.50e-01 95.0% 93.3%
4014784 9.14.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.63 50.0 3.97e-01 97.5% 99.0%
4963243 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.61 51.0 4.38e-01 100.0% 88.6%
3938609 1.1.8.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.61 48.0 4.26e-01 95.0% 96.9%
4964644 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.61 48.0 4.52e-01 100.0% 78.2%
4047164 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.61 50.0 3.99e-01 100.0% 96.7%
3719787 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 46.0 4.61e-01 100.0% 100.0%
5079397 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 45.0 3.57e-01 85.0% 57.6%
5039851 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 43.0 4.40e-01 95.0% 100.0%
3598204 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 49.0 3.93e-01 97.5% 90.6%
4957085 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 49.0 4.22e-01 100.0% 84.6%
3619617 382.1.1.6 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR 0.57 45.0 3.55e-01 100.0% 44.8%
5038355 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.57 43.0 4.00e-01 95.0% 91.7%
3422092 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.56 46.0 3.52e-01 100.0% 72.7%
3381505 3767.1.1.0 ↗ a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain 0.56 45.0 3.06e-01 100.0% 30.8%
4472438 220.4.1.10 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › DUF3586 0.56 44.0 3.69e-01 100.0% 98.8%
5051224 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.55 44.0 3.84e-01 100.0% 98.6%
5016960 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 40.0 4.00e-01 100.0% 97.8%
4287559 375.1.1.22 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD 0.52 40.0 3.97e-01 100.0% 84.4%
3728308 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 41.0 3.25e-01 100.0% 83.0%
3574931 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 41.0 3.70e-01 95.0% 91.7%