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NC_008721.2__YP_950575.1__B189_gp25__00025

Bact-Vir

NC_008721.2__YP_950575.1__B189_gp25__00025

Identity

Accession:
NC_008721 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_SMP

TaxID: 413066

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 62-128
PDB
Domain cluster: rep: MT757392.1__QNI20522.1__KB2_gp044__00040__D84-137
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11753.14 best DUF3310 52.5 6.20e-14 85.1% 93.3%
D2 medium residues 1-60
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3duzA02 2.40.50.710 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 47.0 4.98e-01 71.7% 77.8%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 45.0 3.63e-01 85.0% 33.9%
1fouA02 2.40.500.10 Mainly Beta › Beta Barrel › Upper collar protein gp10 (connector protein) fold › Upper collar protein gp10 (connector protein) 0.64 47.0 3.72e-01 80.0% 85.6%
4okeA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 43.0 3.18e-01 73.3% 68.1%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 35.0 3.16e-01 71.7% 39.3%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.59 46.0 3.41e-01 88.3% 49.7%
1u69D00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 40.0 2.97e-01 71.7% 55.1%
1g6zA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 45.0 4.33e-01 88.3% 74.3%
1dbhA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 41.0 3.23e-01 75.0% 81.2%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.58 39.0 2.78e-01 70.0% 82.9%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 33.0 3.34e-01 70.0% 53.2%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 41.0 3.29e-01 80.0% 36.4%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.57 44.0 3.18e-01 85.0% 43.8%
4r78A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 43.0 3.68e-01 81.7% 72.9%
2jxpA01 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.57 43.0 3.33e-01 83.3% 72.3%
4n4rB00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.56 43.0 3.33e-01 88.3% 68.9%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.56 46.0 3.78e-01 96.7% 94.2%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 38.0 3.17e-01 71.7% 66.0%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.55 38.0 3.21e-01 71.7% 76.7%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 37.0 3.40e-01 70.0% 67.9%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.55 37.0 3.51e-01 75.0% 59.2%
6p66D01 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.54 37.0 3.09e-01 73.3% 76.1%
1b12A02 2.170.230.10 Mainly Beta › Beta Complex › Signal Peptidase I; Chain: A, domain 2 › 0.54 39.0 3.63e-01 76.7% 81.1%
4pavB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 36.0 2.88e-01 71.7% 86.3%
7ffnN01 2.60.40.3200 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain 0.53 40.0 2.96e-01 86.7% 65.2%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.54e-01 75.0% 69.4%
1y2mD01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.53 35.0 2.44e-01 70.0% 28.6%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.53 35.0 3.39e-01 73.3% 59.2%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 39.0 2.54e-01 83.3% 94.7%
6ui4A02 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 44.0 3.32e-01 96.7% 91.0%
6i7eA01 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 43.0 3.16e-01 95.0% 81.7%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.13e-01 76.7% 63.3%
1k0eB00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.51 41.0 2.59e-01 98.3% 98.1%
2innB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.51 43.0 2.60e-01 100.0% 36.1%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.51 37.0 2.76e-01 81.7% 27.7%
5ewtA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.51 38.0 2.62e-01 83.3% 95.5%
4byfC02 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 42.0 3.13e-01 93.3% 75.8%
2b78A02 3.30.750.80 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like 0.51 37.0 3.21e-01 81.7% 79.4%
2kumA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 36.0 3.70e-01 78.3% 80.7%
4at0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 38.0 2.40e-01 85.0% 85.7%
3n40P02 2.60.40.3200 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain 0.50 39.0 2.81e-01 91.7% 58.5%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 38.0 3.42e-01 86.7% 83.7%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5078246 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.73 51.0 3.46e-01 73.3% 59.1%
3783096 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.72 56.0 4.03e-01 83.3% 44.8%
4988955 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.71 48.0 4.86e-01 78.3% 70.0%
3163625 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.68 51.0 3.88e-01 81.7% 67.6%
3227081 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 50.0 4.47e-01 78.3% 91.3%
3505711 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.66 43.0 3.91e-01 73.3% 48.2%
3221377 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.66 46.0 3.70e-01 73.3% 56.5%
3237640 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.65 43.0 3.55e-01 78.3% 37.3%
3585591 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.64 46.0 4.10e-01 78.3% 62.2%
3952480 4.1.1.292 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.63 41.0 4.58e-01 76.7% 88.9%
4154388 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 42.0 3.88e-01 76.7% 51.2%
5010554 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.63 42.0 4.14e-01 78.3% 64.6%
3517415 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.62 40.0 3.95e-01 73.3% 61.5%
3505589 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.61 43.0 3.45e-01 73.3% 93.3%
3512902 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.61 39.0 4.05e-01 78.3% 70.9%
4995763 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 44.0 3.47e-01 76.7% 72.8%
5042869 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.60 43.0 4.22e-01 76.7% 73.8%
4964792 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.59 40.0 2.88e-01 70.0% 56.2%
3348338 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.59 42.0 4.15e-01 73.3% 92.1%
3963954 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.59 43.0 3.26e-01 78.3% 81.4%
3912151 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.59 40.0 3.83e-01 76.7% 61.8%
4642895 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 41.0 3.18e-01 73.3% 49.2%
4989374 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.58 44.0 3.91e-01 81.7% 57.6%
4996016 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.58 43.0 3.28e-01 83.3% 79.4%
3966611 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.58 45.0 3.32e-01 88.3% 58.9%
3601976 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 39.0 2.46e-01 71.7% 18.2%
3974994 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.57 44.0 3.31e-01 88.3% 60.6%
3522979 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 34.0 3.77e-01 75.0% 77.8%
5039029 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.56 41.0 3.59e-01 76.7% 72.2%
3273672 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 41.0 3.08e-01 78.3% 42.7%
4804226 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.56 38.0 3.65e-01 70.0% 95.6%
9277 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.55 40.0 3.29e-01 80.0% 54.5%
3881763 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 34.0 3.48e-01 71.7% 61.7%
3405538 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.55 41.0 2.66e-01 81.7% 74.9%
4975819 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 39.0 2.70e-01 85.0% 20.4%
3771628 189.1.1.0 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP 0.55 33.0 2.15e-01 70.0% 11.6%
5018729 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.55 36.0 3.02e-01 80.0% 37.3%
3268983 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 39.0 3.18e-01 75.0% 60.0%
3527248 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 33.0 3.20e-01 70.0% 51.4%
5025312 169.1.1.1 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.54 41.0 2.54e-01 83.3% 41.3%
3469465 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 39.0 2.25e-01 81.7% 31.9%
5026090 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.53 38.0 3.58e-01 76.7% 82.7%
3269612 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 38.0 3.17e-01 75.0% 63.8%
3888226 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 32.0 3.07e-01 71.7% 48.0%
3527580 220.1.1.145 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RASGAP 0.53 36.0 3.77e-01 70.0% 81.8%
3881195 220.1.1.145 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RASGAP 0.53 38.0 3.56e-01 76.7% 81.3%
4955420 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 42.0 2.77e-01 88.3% 87.9%
5072132 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.52 37.0 3.44e-01 76.7% 82.5%
5024903 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 37.0 3.99e-01 78.3% 96.0%
3562710 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.51 40.0 2.53e-01 93.3% 84.9%
3315219 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 35.0 3.19e-01 75.0% 91.1%