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NC_008721.2__YP_950592.1__B189_gp42__00042

Bact-Vir

NC_008721.2__YP_950592.1__B189_gp42__00042

Identity

Accession:
NC_008721 ↗
Kingdom:
phage

Quality

86.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_SMP

TaxID: 413066

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-100
PDB
Domain cluster: rep: JQ246028.1__AFC61939.1__phi8074-B1_0007__00007__D1-96
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05135.20 best Phage_connect_1 50.7 2.70e-13 99.0% 97.0%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.63 41.0 4.28e-01 75.5% 71.1%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 35.0 3.84e-01 96.9% 67.1%
1gq2A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 52.0 3.76e-01 100.0% 86.0%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.58 43.0 3.44e-01 77.6% 87.4%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 43.0 3.73e-01 80.6% 89.5%
1t33A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 47.0 4.04e-01 90.8% 62.7%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 37.0 3.95e-01 82.7% 77.4%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.57 37.0 4.12e-01 73.5% 85.5%
1dekA02 1.10.238.70 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.55 38.0 3.53e-01 81.6% 57.4%
3ddlA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 40.0 3.03e-01 78.6% 32.9%
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.53 37.0 3.96e-01 71.4% 85.4%
3dv9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 30.0 3.42e-01 90.8% 75.7%
1ng6A01 1.10.1510.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain 0.53 37.0 3.87e-01 75.5% 78.0%
6ig5A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.51 36.0 3.29e-01 75.5% 84.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963507 4275.1.1.1 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_connect_1 0.81 75.0 7.17e-01 99.0% 93.6%
5014943 101.1.2.925 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7344 0.65 38.0 3.35e-01 93.9% 40.0%
3394467 142.3.1.0 ↗ alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain 0.62 48.0 4.94e-01 92.9% 90.0%
4962671 101.1.2.925 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7344 0.61 36.0 3.24e-01 99.0% 41.4%
3799073 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.60 53.0 3.84e-01 100.0% 89.1%
2502877 7073.1.1.1 ↗ alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M 0.60 46.0 4.28e-01 82.7% 67.2%
3614554 171.1.1.0 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.59 42.0 3.28e-01 75.5% 57.4%
2503947 7073.1.1.1 ↗ alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M 0.59 46.0 4.35e-01 82.7% 71.8%
4019703 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.58 41.0 3.44e-01 73.5% 65.1%
3480617 7073.1.1.0 ↗ alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme 0.58 44.0 4.24e-01 82.7% 73.0%
4012501 5059.1.1.42 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA, SLC35F, DUF3955 0.57 42.0 3.00e-01 78.6% 67.8%
3638401 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.56 37.0 3.21e-01 73.5% 41.3%
3481926 7073.1.1.1 ↗ alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M 0.56 43.0 4.26e-01 81.6% 78.8%
3392146 7073.1.1.1 ↗ alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M 0.56 43.0 4.22e-01 81.6% 79.0%
4665476 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.56 48.0 3.71e-01 92.9% 73.5%
3255340 223.2.1.21 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › AP-5_subunit_s1 0.55 46.0 3.71e-01 93.9% 97.5%
3687770 7073.1.1.1 ↗ alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M 0.54 45.0 4.24e-01 91.8% 76.7%
3334749 544.1.1.0 ↗ alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 0.53 38.0 3.42e-01 75.5% 95.7%
3204146 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.53 46.0 3.66e-01 100.0% 73.0%
3343812 7073.1.1.1 ↗ alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M 0.53 45.0 4.45e-01 94.9% 91.4%
3265471 2498.5.1.0 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.51 41.0 3.67e-01 91.8% 81.3%