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NC_009015.1__YP_001039700.1__BcepF1.016__00016

Bact-Vir

NC_009015.1__YP_001039700.1__BcepF1.016__00016

Identity

Accession:
NC_009015 ↗
Kingdom:
phage

Quality

91.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-52
PDB
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 48.0 4.21e-01 97.9% 44.6%
6nhiA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.71 48.0 4.02e-01 91.7% 40.5%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 44.0 3.96e-01 95.8% 45.7%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.68 51.0 4.08e-01 100.0% 41.5%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.68 50.0 4.81e-01 81.2% 74.5%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.66 43.0 4.25e-01 93.8% 60.8%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 45.0 2.72e-01 89.6% 10.5%
4bs9A04 3.30.40.250 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.64 48.0 4.05e-01 85.4% 86.7%
2kjxA01 3.30.720.220 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.62 47.0 4.64e-01 85.4% 83.0%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 47.0 3.75e-01 97.9% 41.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.07e-01 93.8% 55.6%
2e4mC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 51.0 3.69e-01 95.8% 51.0%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 51.0 3.66e-01 95.8% 54.5%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.60 51.0 3.98e-01 100.0% 44.6%
3clqA02 3.90.1710.10 Alpha Beta › Alpha-Beta Complex › Enterococcus faecalis V583 fold › Enterococcus faecalis V583 domain 0.60 52.0 3.64e-01 100.0% 89.9%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.59 43.0 2.76e-01 100.0% 16.2%
2cnqA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 44.0 3.20e-01 85.4% 83.9%
1y0nA00 1.10.10.610 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › YehU-like 0.58 51.0 4.53e-01 100.0% 94.4%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.57 40.0 3.90e-01 100.0% 66.7%
1n7oA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.56 33.0 2.79e-01 81.2% 31.8%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.56 41.0 3.99e-01 91.7% 69.6%
7qzqA01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.56 46.0 2.81e-01 95.8% 25.2%
2x5rA01 3.30.470.40 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.55 44.0 3.45e-01 93.8% 75.7%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 40.0 2.88e-01 89.6% 45.7%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 41.0 3.00e-01 83.3% 85.4%
2vp7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 43.0 4.00e-01 93.8% 93.9%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.54 44.0 3.53e-01 93.8% 92.0%
3ho6B00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.54 42.0 2.71e-01 87.5% 26.2%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 44.0 3.35e-01 100.0% 85.4%
4fumA01 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.53 41.0 3.59e-01 85.4% 83.8%
6pzjA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 44.0 3.24e-01 100.0% 58.1%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 43.0 3.47e-01 100.0% 56.5%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.52 39.0 3.21e-01 83.3% 55.4%
1w96C04 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 38.0 2.49e-01 85.4% 33.6%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 43.0 3.35e-01 100.0% 44.3%
4wz9A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.51 44.0 2.89e-01 100.0% 59.8%
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 35.0 3.77e-01 97.9% 91.9%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.50 41.0 3.35e-01 97.9% 48.0%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3626927 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.80 58.0 5.59e-01 100.0% 67.3%
3733166 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.79 70.0 6.71e-01 100.0% 87.3%
4420729 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.78 54.0 6.04e-01 75.0% 100.0%
3587295 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.77 68.0 6.19e-01 100.0% 86.2%
3634384 4292.2.1.2 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B 0.73 62.0 4.62e-01 100.0% 68.5%
4678506 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.72 49.0 4.38e-01 93.8% 50.0%
3929512 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.67 55.0 5.22e-01 97.9% 90.0%
3594333 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.67 44.0 4.67e-01 81.2% 82.5%
2035461 3380.1.1.1 a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Lsr2 0.67 50.0 4.82e-01 83.3% 75.0%
3830500 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.66 55.0 5.26e-01 100.0% 85.0%
3451173 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 50.0 4.10e-01 95.8% 44.4%
3315604 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.66 54.0 4.95e-01 95.8% 80.0%
3700573 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.66 56.0 4.57e-01 100.0% 89.5%
3821671 376.1.1.63 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › C1_2 0.65 53.0 4.04e-01 95.8% 42.4%
3332568 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.65 53.0 4.46e-01 97.9% 56.7%
3211857 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.65 50.0 5.09e-01 95.8% 95.6%
3380774 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.65 52.0 4.88e-01 95.8% 84.1%
4002849 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.64 50.0 5.08e-01 89.6% 100.0%
3805691 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.64 53.0 4.21e-01 100.0% 50.0%
3720527 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.63 46.0 3.11e-01 77.1% 65.5%
3343538 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.63 51.0 4.59e-01 97.9% 73.3%
3425799 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.63 51.0 4.52e-01 95.8% 77.3%
3346269 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.63 52.0 4.37e-01 100.0% 62.2%
3664051 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.63 51.0 4.28e-01 100.0% 58.9%
3432877 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.17e-01 95.8% 58.5%
3268433 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.62 51.0 4.50e-01 100.0% 81.2%
3684414 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.62 50.0 4.41e-01 97.9% 81.2%
2167777 330.10.1.1 a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.62 49.0 4.12e-01 91.7% 64.0%
4938633 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 48.0 3.40e-01 83.3% 31.9%
4950639 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 49.0 3.32e-01 87.5% 79.3%
3819521 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.61 47.0 4.59e-01 89.6% 92.7%
3441395 5.1.3.159 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.60 52.0 3.18e-01 100.0% 30.0%
3803132 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.60 47.0 4.85e-01 89.6% 100.0%
5071881 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.60 44.0 4.21e-01 83.3% 68.3%
5058926 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.59 52.0 4.53e-01 100.0% 65.3%
3367557 4099.1.1.41 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › FmiP_Thoc5 0.59 48.0 3.40e-01 87.5% 32.6%
3266842 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 50.0 3.75e-01 100.0% 86.4%
3804709 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.58 47.0 2.97e-01 97.9% 73.4%
3831215 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.58 42.0 4.10e-01 83.3% 100.0%
3215090 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 49.0 4.49e-01 100.0% 87.7%
3205743 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.57 41.0 3.11e-01 85.4% 31.7%
3587060 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 39.0 3.43e-01 85.4% 46.7%
4935307 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 42.0 3.54e-01 79.2% 47.5%
3954203 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 43.0 3.79e-01 87.5% 54.7%
4964393 236.3.1.1 beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 0.57 49.0 4.29e-01 100.0% 77.3%
4948484 102.1.1.13 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF655 0.56 48.0 3.36e-01 100.0% 39.6%
4934376 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 45.0 4.05e-01 93.8% 78.6%
3703907 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 49.0 4.46e-01 100.0% 89.2%
5029199 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 41.0 3.57e-01 83.3% 52.5%
4028836 375.5.1.1 few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like › NOB1_Zn_bind 0.55 42.0 3.87e-01 85.4% 81.5%
3811931 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.55 43.0 4.03e-01 93.8% 84.4%
4081551 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.54 43.0 2.93e-01 89.6% 30.6%
3211871 2008.1.1.31 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VRR_NUC 0.54 43.0 2.83e-01 95.8% 20.8%
3739035 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 43.0 4.10e-01 100.0% 75.0%
3656396 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.53 45.0 3.18e-01 100.0% 38.2%
3235657 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.53 40.0 4.11e-01 83.3% 97.8%
3507295 304.166.1.9 a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 0.52 42.0 3.38e-01 91.7% 45.0%
3927286 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.52 38.0 3.31e-01 87.5% 50.7%
3391411 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 38.0 4.03e-01 85.4% 95.0%
3804385 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 38.0 3.63e-01 89.6% 90.0%
5023601 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.50 37.0 3.43e-01 95.8% 91.3%
4836960 375.5.1.1 few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like › NOB1_Zn_bind 0.50 38.0 3.46e-01 87.5% 80.3%
D2 high residues 57-120
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ja9A02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.76 43.0 3.96e-01 84.4% 42.9%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.70 63.0 4.90e-01 100.0% 71.6%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 59.0 4.67e-01 98.4% 82.1%
1e6vB02 1.20.840.10 Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal 0.68 51.0 3.31e-01 81.2% 18.0%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 46.0 3.44e-01 70.3% 47.3%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 45.0 3.51e-01 70.3% 56.4%
1lqlA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.66 55.0 4.77e-01 95.3% 82.5%
2zbkA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 42.0 3.38e-01 87.5% 33.9%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.63 39.0 3.42e-01 96.9% 40.8%
4n4nB00 3.90.640.100 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.63 31.0 3.31e-01 78.1% 48.2%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.62 45.0 3.95e-01 78.1% 54.7%
3zmdA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 52.0 4.09e-01 100.0% 81.8%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 47.0 3.80e-01 85.9% 66.7%
2dulA02 3.30.56.70 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › N2,N2-dimethylguanosine tRNA methyltransferase, C-terminal domain 0.59 39.0 4.04e-01 70.3% 72.9%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 3.56e-01 84.4% 81.6%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 3.92e-01 93.8% 97.6%
1jgsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 3.86e-01 96.9% 85.5%
4g08A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.58 43.0 4.20e-01 79.7% 84.3%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.58 41.0 4.04e-01 76.6% 76.1%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.67e-01 90.6% 86.4%
3fryA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 44.0 4.40e-01 89.1% 84.4%
3ewgA00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.57 43.0 4.03e-01 82.8% 68.8%
4iggB06 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 47.0 3.31e-01 93.8% 94.4%
3dcaA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 45.0 3.64e-01 90.6% 63.8%
3rv0C02 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.56 47.0 3.71e-01 100.0% 43.8%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 3.64e-01 95.3% 83.6%
3lv0A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.55 44.0 3.40e-01 87.5% 41.0%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 47.0 3.34e-01 100.0% 53.8%
3p1tA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 45.0 3.68e-01 92.2% 66.4%
3l0aA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.54 42.0 2.82e-01 85.9% 45.5%
4lmoA00 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.54 45.0 3.08e-01 96.9% 51.4%
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 41.0 2.86e-01 89.1% 71.5%
2f1fA02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.54 36.0 3.43e-01 70.3% 61.5%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 40.0 3.89e-01 82.8% 73.0%
3ckcA01 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 40.0 2.77e-01 81.2% 50.9%
2qmlA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 41.0 2.94e-01 84.4% 68.9%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 45.0 3.60e-01 100.0% 77.5%
3pcoB05 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 43.0 3.11e-01 93.8% 99.5%
5ly3A02 3.30.420.570 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.53 44.0 3.11e-01 95.3% 51.3%
1t7pA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.53 46.0 3.46e-01 96.9% 86.0%
2ctfA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 40.0 3.51e-01 84.4% 61.8%
2jmlA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.53 36.0 3.48e-01 78.1% 59.3%
5i2cB01 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.52 40.0 3.07e-01 81.2% 36.3%
2lepA00 3.30.70.2350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 3.74e-01 76.6% 84.1%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 42.0 3.14e-01 89.1% 34.7%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.51 38.0 3.08e-01 89.1% 39.7%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.35e-01 95.3% 81.0%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.51 40.0 3.16e-01 95.3% 98.2%
5znqA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 40.0 2.93e-01 85.9% 90.7%
7oq4Z01 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.51 38.0 3.44e-01 85.9% 85.7%
3kdqA00 6.10.320.10 Special › Helix non-globular › Ferritin › 0.51 46.0 3.45e-01 100.0% 44.7%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3221654 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.82 49.0 3.53e-01 70.3% 23.6%
3457354 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.80 45.0 3.43e-01 76.6% 24.8%
3710532 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.76 48.0 3.97e-01 100.0% 39.0%
3616294 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.73 44.0 3.51e-01 81.2% 31.2%
5017106 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.69 43.0 3.24e-01 70.3% 26.5%
5050732 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.69 45.0 3.60e-01 78.1% 35.8%
4889887 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.68 60.0 4.58e-01 100.0% 45.2%
3593102 1016.1.1.0 alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 0.67 52.0 4.09e-01 82.8% 88.5%
3718884 108.1.1.44 alpha arrays › EF-hand › EF-hand-related › EF-hand › FCaBP_EF-hand 0.66 49.0 4.26e-01 90.6% 50.5%
3321176 5051.1.1.6 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.64 55.0 3.35e-01 98.4% 30.7%
3285968 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.63 54.0 4.24e-01 100.0% 82.4%
4603920 101.1.9.83 alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.63 44.0 4.15e-01 75.0% 60.0%
4940257 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 48.0 4.66e-01 81.2% 80.0%
3724047 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.63 54.0 3.51e-01 100.0% 20.6%
3422075 101.1.9.83 alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.62 45.0 3.77e-01 78.1% 44.3%
3386423 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.62 46.0 3.59e-01 96.9% 36.4%
3731378 101.1.9.83 alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.62 45.0 4.33e-01 79.7% 68.0%
3636193 101.1.9.83 alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.61 45.0 3.60e-01 79.7% 38.5%
4988554 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 44.0 4.44e-01 84.4% 75.4%
3958184 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.61 49.0 3.79e-01 92.2% 40.0%
3759757 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.61 49.0 4.17e-01 90.6% 53.3%
3212403 3877.1.1.1 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.60 51.0 3.48e-01 100.0% 26.7%
3933404 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 41.0 3.11e-01 71.9% 34.7%
4643071 101.1.9.83 alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.59 43.0 4.55e-01 79.7% 89.1%
4520394 5063.1.1.1 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK 0.59 47.0 4.62e-01 89.1% 82.6%
4408011 101.1.9.83 alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.59 41.0 4.11e-01 73.4% 72.3%
260014 327.16.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.58 43.0 4.21e-01 79.7% 84.3%
3719876 4018.1.1.1 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.58 47.0 3.42e-01 89.1% 45.9%
2831995 5063.1.1.1 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK 0.57 48.0 4.78e-01 100.0% 92.8%
4988114 3646.1.1.1 alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.57 45.0 3.15e-01 100.0% 24.7%
4029803 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 46.0 3.60e-01 85.9% 47.7%
3738318 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.57 43.0 4.08e-01 84.4% 78.8%
4986929 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.56 44.0 3.35e-01 84.4% 37.9%
3783976 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 43.0 3.88e-01 85.9% 85.6%
3173926 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 50.0 3.56e-01 100.0% 53.9%
4933713 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.54 40.0 4.00e-01 79.7% 78.5%
3931606 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 45.0 3.70e-01 92.2% 52.2%
4994900 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 48.0 3.84e-01 100.0% 76.8%
4975038 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.53 37.0 3.73e-01 84.4% 72.3%
3959213 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.53 38.0 3.11e-01 81.2% 39.2%
3880521 7579.1.1.96 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Abhydrolase_1 0.53 44.0 3.00e-01 100.0% 69.5%
3991902 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 46.0 3.82e-01 96.9% 70.0%
4494181 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 47.0 3.58e-01 100.0% 58.6%
3174328 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.52 40.0 3.92e-01 84.4% 87.1%
3700415 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 45.0 3.06e-01 100.0% 47.2%
4025655 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 47.0 4.09e-01 100.0% 71.6%
3707421 5050.1.1.6 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.52 45.0 3.04e-01 100.0% 45.4%
3515407 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 46.0 3.37e-01 100.0% 47.0%
3771989 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 47.0 3.60e-01 100.0% 50.4%
4955353 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.42e-01 90.6% 59.1%
5041857 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 44.0 3.42e-01 96.9% 62.6%
1269742 3837.1.1.1 alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 0.51 46.0 3.45e-01 100.0% 44.7%
3939311 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 46.0 3.79e-01 100.0% 61.8%
3177612 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.50 44.0 3.50e-01 96.9% 71.2%
3538408 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.50 45.0 3.96e-01 100.0% 87.4%