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NC_009018.1__YP_001039916.1__phi3396_29__00029

Bact-Vir

NC_009018.1__YP_001039916.1__phi3396_29__00029

Identity

Accession:
NC_009018 ↗
Kingdom:
phage

Quality

88.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_phi3396

TaxID: 423476

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-144
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 42.0 5.66e-01 70.2% 98.4%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.67 37.0 4.58e-01 97.5% 86.8%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.65 47.0 4.47e-01 99.2% 63.4%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.63 43.0 3.87e-01 95.9% 49.7%
4nphA02 1.20.1270.330 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 37.0 4.42e-01 92.6% 100.0%
3rguB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.59 38.0 4.38e-01 100.0% 89.7%
3b4qA00 1.10.1200.100 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae 0.59 25.0 2.89e-01 95.0% 51.7%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.58 38.0 3.93e-01 100.0% 69.3%
2q7rB00 1.20.120.550 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain 0.56 42.0 3.99e-01 100.0% 65.3%
3d2eA06 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 35.0 3.65e-01 100.0% 66.4%
2n00A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.56 33.0 3.67e-01 94.2% 73.7%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.55 40.0 4.04e-01 97.5% 76.3%
8gy0A01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 42.0 3.26e-01 86.0% 69.4%
5t3wA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 39.0 3.73e-01 100.0% 67.2%
4k84A00 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.52 39.0 3.28e-01 81.0% 46.6%
6ygiB01 1.10.4090.10 Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus 0.51 37.0 3.55e-01 93.4% 63.0%
6vydA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.51 45.0 3.45e-01 100.0% 83.9%
2i53A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 35.0 3.61e-01 91.7% 75.7%
8gr7A01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.50 45.0 3.36e-01 100.0% 83.5%
3v1vA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.50 44.0 3.34e-01 100.0% 86.8%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4570076 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.77 49.0 3.69e-01 74.4% 27.9%
4585396 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.77 49.0 4.44e-01 74.4% 48.8%
4563221 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.77 49.0 5.48e-01 74.4% 82.1%
4034281 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 60.0 6.30e-01 95.0% 90.9%
3974118 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 53.0 5.93e-01 95.0% 100.0%
4112812 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.73 48.0 5.12e-01 71.1% 76.2%
4213931 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.73 46.0 5.40e-01 72.7% 90.6%
4588807 101.1.1.74 ↗ alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_3 0.73 46.0 4.96e-01 98.3% 76.0%
4097443 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.72 47.0 4.16e-01 72.7% 46.5%
4674817 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.70 48.0 4.21e-01 73.6% 47.4%
3578154 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 45.0 5.13e-01 84.3% 91.1%
5056276 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.68 57.0 5.17e-01 89.3% 94.4%
3589001 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 51.0 5.34e-01 96.7% 88.9%
4383728 605.1.1.94 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › RMP1 0.62 32.0 3.40e-01 89.3% 55.2%
5000490 633.15.1.0 ↗ alpha bundles › Bromodomain-like › alpha-ketoacid dehydrogenase kinase-N › alpha-ketoacid dehydrogenase kinase-N 0.62 36.0 3.63e-01 89.3% 57.5%
4936976 633.10.1.2 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Bbp7-like 0.61 38.0 4.07e-01 100.0% 72.4%
3214390 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.57 39.0 3.72e-01 100.0% 60.0%
3480868 5054.1.1.9 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › PKD_channel 0.55 44.0 3.37e-01 86.8% 62.1%
4575614 5045.1.1.1 ↗ alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A 0.54 45.0 3.54e-01 89.3% 89.2%
3204638 3567.1.1.104 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › EMP70 0.54 43.0 3.86e-01 83.5% 79.4%
3725267 611.7.1.0 ↗ alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain 0.53 42.0 4.14e-01 100.0% 79.2%
3466160 611.9.1.4 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.53 43.0 4.26e-01 100.0% 83.1%
4031805 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.52 39.0 4.06e-01 96.7% 85.5%
3249343 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.52 47.0 3.84e-01 100.0% 74.7%
4114948 141.1.1.8 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 0.51 46.0 3.29e-01 100.0% 83.5%
3220993 5057.1.1.0 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.51 45.0 4.28e-01 97.5% 81.9%
3235528 5057.1.1.1 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.51 45.0 4.25e-01 97.5% 81.4%
3713201 4323.1.1.1 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.51 35.0 3.35e-01 71.9% 70.3%