←Back to structures
NC_009231.1__YP_001110724.1__phiC2p06__00006
Bact-VirNC_009231.1__YP_001110724.1__phiC2p06__00006
Identity
- Accession:
- NC_009231 ↗
- Kingdom:
- phage
Quality
80.7
mean pLDDT
Taxonomy
TaxID: 2849703
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-61
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pgjA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.63 | 49.0 | 3.27e-01 | 86.9% | 61.2% |
| 1nktA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.59 | 45.0 | 3.32e-01 | 85.2% | 29.4% |
| 2lp7A00 | 1.10.287.210 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 41.0 | 4.23e-01 | 88.5% | 81.4% |
| 2aqjA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 44.0 | 2.63e-01 | 88.5% | 22.6% |
| 1uklC00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.54 | 44.0 | 4.45e-01 | 93.4% | 91.8% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3392701 | 1128.1.1.3 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › UQCC2_CBP6 | 0.53 | 39.0 | 3.74e-01 | 77.0% | 84.3% |
| 3796798 | 109.4.1.21 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ENTH | 0.52 | 36.0 | 2.60e-01 | 72.1% | 65.9% |
| 3174606 | 377.1.1.10 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ArfGap | 0.51 | 41.0 | 2.82e-01 | 93.4% | 36.5% |
D2
medium
residues 64-146
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06810.18 best | Phage_scaffold | 42.5 | 9.90e-11 | 100.0% | 50.6% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 52.0 | 4.23e-01 | 73.5% | 42.9% |
| 3tbiB02 | 6.10.140.1670 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 50.0 | 4.75e-01 | 74.7% | 78.0% |
| 4ciuA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 49.0 | 3.63e-01 | 74.7% | 39.6% |
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.64 | 46.0 | 4.64e-01 | 74.7% | 90.1% |
| 1n5uA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.63 | 43.0 | 4.25e-01 | 71.1% | 78.9% |
| 3dplC03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 43.0 | 4.33e-01 | 88.0% | 98.8% |
| 1rtwB00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.53 | 38.0 | 2.97e-01 | 79.5% | 71.2% |
| 1kxpD02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.52 | 36.0 | 3.63e-01 | 72.3% | 83.0% |