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NC_009231.1__YP_001110731.1__phiC2p13__00013

Bact-Vir

NC_009231.1__YP_001110731.1__phiC2p13__00013

Identity

Accession:
NC_009231 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yongloolinvirus› Clostridioides_phage_phiC2

TaxID: 2849703

Cluster

View cluster (49 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 102-175
PDB
Domain cluster: rep: IMGVR_UViG_3300012983_000214-3300012983-Ga0123349_1000122021__D107-181
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17481.8 best Phage_sheath_domII 71.5 9.00e-20 98.7% 77.5%
D2 medium residues 37-96_184-324
PDB
Domain cluster: rep: IMGVR_UViG_648028040_000001-648028040-648194435__D26-229
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04984.20 best Phage_sheath_1 114.9 5.00e-33 70.7% 96.4%
D3 medium residues 338-422
PDB
Domain cluster: rep: OQ627803.1__WFD52849.1__X__00001__D2-77
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17482.8 best Phage_sheath_1C 83.7 1.20e-23 100.0% 81.7%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lmlA01 3.10.450.690 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.93 84.0 7.28e-01 94.1% 71.9%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.69 57.0 5.46e-01 91.8% 97.0%
2qdfA03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.68 50.0 5.27e-01 88.2% 85.7%
6a9tA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.67 58.0 4.22e-01 100.0% 54.1%
3cb6A02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.65 57.0 4.07e-01 100.0% 43.6%
2j82A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.64 50.0 3.75e-01 85.9% 68.3%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.61 45.0 3.27e-01 80.0% 44.7%
4k3bA03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.60 50.0 4.92e-01 98.8% 85.9%
1ka1A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.58 50.0 3.80e-01 100.0% 73.5%
3dewA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 45.0 3.84e-01 83.5% 82.9%
3l0gB01 3.90.1170.20 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain 0.57 40.0 3.67e-01 75.3% 66.9%
7yq0B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 50.0 4.04e-01 98.8% 88.0%
1ni4A00 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.55 47.0 3.08e-01 94.1% 77.9%
4xaaA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.54 47.0 3.53e-01 97.6% 93.7%
4jykA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 43.0 3.70e-01 89.4% 74.8%
3qnmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 42.0 4.19e-01 95.3% 82.2%
3n2oA03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 37.0 3.60e-01 74.1% 76.0%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.52 43.0 3.05e-01 92.9% 91.8%
3adoA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 39.0 3.02e-01 80.0% 89.2%
2fx0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 45.0 3.92e-01 98.8% 81.8%
2im5A00 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.51 43.0 2.84e-01 95.3% 26.7%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.61e-01 80.0% 76.5%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
386335 283.2.1.2 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C 0.94 89.0 7.92e-01 100.0% 80.7%
2391376 283.2.1.2 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C 0.87 70.0 7.45e-01 91.8% 95.9%
4957559 283.2.1.2 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C 0.87 83.0 7.76e-01 100.0% 89.0%
3980756 283.2.1.2 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C 0.86 82.0 7.52e-01 100.0% 81.9%
1148184 283.2.1.2 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C 0.82 76.0 6.98e-01 100.0% 78.7%
3226972 864.1.1.2 ↗ a+b two layers › DLC › DLC › DLC › Tctex-1 0.72 63.0 5.60e-01 94.1% 90.7%
3232320 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.66 51.0 3.56e-01 85.9% 55.3%
3731848 283.1.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.65 58.0 4.06e-01 100.0% 43.3%
167768 191.1.1.10 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_6 0.62 51.0 4.54e-01 88.2% 94.3%
3648828 198.1.1.4 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.62 52.0 4.54e-01 95.3% 92.6%
4488163 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.62 46.0 2.88e-01 80.0% 26.3%
3274698 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.62 41.0 2.98e-01 70.6% 24.2%
4124807 101.11.1.0 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.59 48.0 4.74e-01 89.4% 100.0%
3387986 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.58 47.0 3.42e-01 88.2% 60.8%
3883169 5001.1.1.3 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.58 44.0 3.13e-01 81.2% 61.9%
3254236 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 39.0 3.64e-01 94.1% 56.2%
3615029 4955.1.1.0 ↗ a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.58 41.0 4.06e-01 98.8% 71.1%
3741246 3343.1.1.1 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal 0.57 48.0 2.99e-01 97.6% 20.3%
3925167 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.57 41.0 2.77e-01 75.3% 37.6%
4605063 304.102.1.1 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.57 43.0 3.03e-01 81.2% 26.4%
None — 0.57 49.0 3.39e-01 100.0% 52.0%
3739207 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.57 47.0 4.54e-01 90.6% 94.7%
3506058 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 40.0 3.80e-01 94.1% 63.0%
4477197 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.55 38.0 2.59e-01 70.6% 34.2%
2326457 304.139.1.6 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas7fv-like 0.54 48.0 3.37e-01 100.0% 76.0%
3581870 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.53 43.0 4.50e-01 95.3% 97.5%
3567088 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 35.0 3.69e-01 94.1% 77.3%
3226593 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.52 38.0 3.48e-01 75.3% 85.5%
4019596 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.52 44.0 3.47e-01 97.6% 91.2%
3512028 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.51 43.0 3.15e-01 100.0% 81.9%
5077611 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.55e-01 85.9% 98.4%
3954697 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.51 39.0 3.44e-01 84.7% 83.8%