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NC_009231.1__YP_001110771.1__phiC2p56__00053

Bact-Vir

NC_009231.1__YP_001110771.1__phiC2p56__00053

Identity

Accession:
NC_009231 ↗
Kingdom:
phage

Quality

79.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 65-120
PDB
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.84 66.0 6.44e-01 100.0% 78.3%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 62.0 5.91e-01 100.0% 75.8%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.76 63.0 6.16e-01 100.0% 85.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.74 50.0 3.71e-01 100.0% 28.5%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.74 55.0 4.44e-01 100.0% 40.7%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 57.0 4.76e-01 87.5% 98.0%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.71 57.0 5.27e-01 100.0% 69.0%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.69 61.0 5.51e-01 100.0% 84.2%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 57.0 5.44e-01 100.0% 80.0%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.68 54.0 5.00e-01 100.0% 69.0%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.68 53.0 4.81e-01 100.0% 62.3%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.67 54.0 5.35e-01 100.0% 84.7%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 53.0 4.10e-01 100.0% 39.2%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 51.0 4.10e-01 87.5% 88.1%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.66 58.0 5.36e-01 100.0% 87.5%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 53.0 5.16e-01 96.4% 98.4%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 5.16e-01 100.0% 85.3%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.63 49.0 3.89e-01 87.5% 90.8%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 4.36e-01 100.0% 56.5%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 52.0 5.02e-01 98.2% 96.9%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 51.0 4.50e-01 100.0% 70.7%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.66e-01 100.0% 76.6%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 52.0 5.05e-01 98.2% 96.8%
1boxA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.61 50.0 4.22e-01 91.1% 57.9%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 52.0 5.27e-01 96.4% 100.0%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.61 51.0 3.52e-01 96.4% 30.4%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 51.0 5.03e-01 98.2% 95.0%
6o1wA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 46.0 3.05e-01 83.9% 91.8%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 52.0 5.02e-01 100.0% 96.8%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.60 47.0 3.63e-01 87.5% 91.6%
1hh2P02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 43.0 4.18e-01 76.8% 71.4%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 4.36e-01 100.0% 58.3%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 51.0 4.17e-01 100.0% 67.9%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 51.0 4.31e-01 100.0% 60.2%
7w3rB01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 51.0 3.22e-01 100.0% 86.8%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 4.51e-01 98.2% 70.0%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 4.45e-01 100.0% 78.6%
2kqfA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 44.0 3.77e-01 83.9% 81.2%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 52.0 3.16e-01 100.0% 91.0%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 50.0 4.83e-01 100.0% 87.7%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.91e-01 100.0% 98.3%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.69e-01 98.2% 100.0%
1yt3A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 44.0 3.08e-01 85.7% 33.0%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.89e-01 100.0% 98.2%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 50.0 4.62e-01 100.0% 84.7%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 48.0 4.48e-01 100.0% 86.7%
1bdp001 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 43.0 3.03e-01 83.9% 30.4%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 48.0 4.73e-01 100.0% 100.0%
2yzsA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.57 44.0 3.95e-01 85.7% 78.8%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.57 47.0 3.67e-01 100.0% 63.8%
5gviA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 48.0 3.04e-01 100.0% 93.0%
7jw2A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 42.0 2.95e-01 85.7% 31.4%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 43.0 4.39e-01 87.5% 90.9%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 4.02e-01 83.9% 91.5%
7qu9A01 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.54 44.0 2.69e-01 98.2% 78.5%
2zxrA01 2.40.50.460 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 40.0 2.95e-01 83.9% 76.6%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.78e-01 87.5% 78.4%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 42.0 4.23e-01 100.0% 98.2%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 42.0 4.20e-01 100.0% 96.5%
1ivyB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 35.0 2.16e-01 76.8% 53.6%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1482194 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.84 66.0 6.44e-01 100.0% 78.3%
4478186 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 62.0 6.76e-01 98.2% 100.0%
4945344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 67.0 4.09e-01 100.0% 15.4%
4589595 4.1.1.447 beta barrels › SH3 › SH3 › SH3 › PF28065 0.80 71.0 6.73e-01 100.0% 83.1%
5063433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 59.0 6.19e-01 100.0% 92.0%
1263519 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.78 64.0 6.19e-01 100.0% 80.6%
4104821 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 66.0 5.98e-01 100.0% 69.3%
4505797 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.77 66.0 6.28e-01 100.0% 80.0%
5004476 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 62.0 5.91e-01 100.0% 75.4%
4359892 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.76 62.0 5.48e-01 100.0% 62.5%
4941512 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 58.0 5.46e-01 100.0% 67.1%
4985969 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 59.0 5.80e-01 100.0% 80.0%
3967986 4.7.1.2 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.76 67.0 5.98e-01 100.0% 75.0%
4182977 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.75 53.0 5.21e-01 100.0% 70.0%
4347922 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 62.0 6.11e-01 100.0% 86.7%
4033484 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 64.0 6.17e-01 100.0% 85.9%
4680376 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.74 55.0 5.53e-01 100.0% 81.8%
5032461 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 65.0 6.21e-01 100.0% 87.7%
5045214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 65.0 6.06e-01 100.0% 80.0%
4974211 4.1.1.485 beta barrels › SH3 › SH3 › SH3 › DUF6897 0.73 58.0 5.72e-01 100.0% 83.3%
3305577 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.72 57.0 5.76e-01 100.0% 87.3%
3927363 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.51e-01 96.4% 92.0%
3991244 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.69 50.0 5.38e-01 96.4% 97.8%
5010981 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 45.0 4.53e-01 82.1% 69.1%
5058103 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 57.0 5.41e-01 100.0% 77.9%
3222051 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 52.0 4.96e-01 98.2% 72.3%
3489979 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 53.0 3.66e-01 89.3% 49.3%
3821751 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.67 59.0 5.28e-01 100.0% 70.0%
4354770 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.67 56.0 5.23e-01 100.0% 75.7%
4941620 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.50e-01 100.0% 88.3%
4138563 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.36e-01 100.0% 81.5%
4959077 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.42e-01 98.2% 100.0%
540 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.65 51.0 5.36e-01 98.2% 100.0%
3481296 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 52.0 4.05e-01 91.1% 75.4%
3488502 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 53.0 4.18e-01 92.9% 86.7%
4091791 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.90e-01 94.6% 86.7%
4937731 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.47e-01 98.2% 91.7%
3894798 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.64 47.0 5.11e-01 85.7% 100.0%
4995694 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 49.0 4.93e-01 96.4% 90.9%
3537941 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 54.0 4.80e-01 100.0% 75.3%
2410169 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 56.0 4.91e-01 100.0% 79.5%
3926701 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 54.0 5.13e-01 100.0% 88.2%
3908332 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 54.0 5.21e-01 100.0% 87.7%
3522694 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 54.0 4.58e-01 100.0% 67.4%
526 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.50e-01 100.0% 70.7%
5058926 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.61 54.0 4.92e-01 100.0% 74.7%
166904 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 51.0 4.88e-01 94.6% 93.9%
3434621 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.61 46.0 2.97e-01 83.9% 32.5%
3259033 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 52.0 5.12e-01 98.2% 95.0%
3933788 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 5.04e-01 100.0% 91.7%
4026143 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 52.0 4.26e-01 100.0% 67.3%
3574751 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.87e-01 85.7% 100.0%
436188 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 50.0 4.73e-01 94.6% 92.5%
3398175 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 51.0 4.91e-01 100.0% 98.5%
3523030 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 50.0 4.86e-01 100.0% 100.0%
3526950 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 51.0 5.04e-01 100.0% 96.7%
3928985 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 49.0 4.36e-01 100.0% 66.7%
3920897 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 49.0 4.58e-01 98.2% 80.0%
3888222 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 50.0 4.76e-01 100.0% 82.9%
3797970 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 50.0 4.36e-01 100.0% 66.7%
3525376 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 49.0 4.74e-01 98.2% 92.3%
3998645 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 50.0 4.80e-01 100.0% 87.7%
3517456 4.1.1.334 beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.58 48.0 4.39e-01 94.6% 98.7%
3933965 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 48.0 4.79e-01 96.4% 96.6%
3737825 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 48.0 4.88e-01 96.4% 98.2%
3585452 4.1.1.334 beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.57 48.0 4.59e-01 100.0% 94.3%
3939132 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 49.0 4.13e-01 100.0% 78.0%
3748846 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 48.0 4.66e-01 100.0% 86.2%
3573775 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 48.0 4.65e-01 98.2% 84.6%
5062211 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.57 47.0 3.25e-01 94.6% 84.0%
3258882 309.1.2.0 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain 0.56 44.0 3.24e-01 89.3% 70.9%
3243949 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 47.0 4.64e-01 100.0% 93.3%
4333172 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.56 43.0 2.98e-01 85.7% 33.0%
3892039 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 48.0 2.90e-01 100.0% 90.1%
3685910 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 41.0 2.90e-01 85.7% 34.0%
3625909 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 46.0 4.19e-01 98.2% 70.0%
3995092 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.54 43.0 3.11e-01 98.2% 28.0%
3522718 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 44.0 4.36e-01 98.2% 96.7%