←Back to structures

NC_009235.2__YP_001111135.1__BPSphi6442_0057__00056

Bact-Vir

NC_009235.2__YP_001111135.1__BPSphi6442_0057__00056

Identity

Accession:
NC_009235 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanholtvirus› Burkholderia_phage_phi644-2

TaxID: 2881400

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-69_136-220
PDB
Domain cluster: rep: IMGVR_UViG_3300000928_002594-3300000928-OpTDRAFT_100169606__D4-180
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01507.26 best PAPS_reduct 28.9 1.60e-06 98.7% 82.9%
CATH (66)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vrhA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.80 76.0 5.85e-01 100.0% 55.0%
2goyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.79 76.0 6.48e-01 100.0% 72.5%
2dplA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.79 69.0 6.66e-01 100.0% 82.3%
2oq2D00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.78 74.0 6.13e-01 100.0% 65.4%
4bwvA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.77 73.0 6.25e-01 100.0% 69.2%
2vxoA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.76 73.0 6.25e-01 100.0% 81.4%
1xngA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.75 70.0 5.79e-01 100.0% 59.1%
3n05A02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.75 71.0 6.49e-01 100.0% 78.3%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.74 69.0 5.59e-01 100.0% 57.0%
2pg3A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.73 68.0 5.90e-01 100.0% 75.9%
2derB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.72 68.0 6.02e-01 100.0% 88.7%
4wnyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.66 54.0 5.79e-01 91.9% 97.0%
7zllA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.64 58.0 4.77e-01 99.3% 96.7%
2jaxA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.64 51.0 5.58e-01 89.9% 100.0%
3hgmA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 54.0 5.49e-01 89.9% 99.3%
2z3vA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 54.0 5.68e-01 90.6% 98.5%
4bxoA01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 38.0 4.02e-01 86.6% 68.9%
3ab8A00 3.40.50.12370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 55.0 4.52e-01 97.3% 55.9%
3nbkD00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 54.0 5.28e-01 98.7% 88.3%
3hs3A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 40.0 4.29e-01 97.3% 78.6%
4pqhA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 30.0 3.68e-01 91.9% 73.2%
3cisH00 3.40.50.12370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 54.0 4.32e-01 99.3% 51.1%
4kpnA00 3.90.245.10 Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like 0.59 54.0 4.21e-01 100.0% 98.4%
1yoeA00 3.90.245.10 Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like 0.59 53.0 4.23e-01 100.0% 98.7%
4mixA00 3.90.550.20 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › 0.59 50.0 4.07e-01 91.3% 88.4%
7lvlA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 47.0 3.80e-01 87.2% 100.0%
5u4nA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 50.0 3.89e-01 98.0% 84.3%
2r60A02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.57 51.0 4.52e-01 98.0% 69.8%
5l9aB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 50.0 3.99e-01 98.7% 96.6%
2yy7A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 50.0 4.01e-01 98.7% 98.7%
6vloD01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 49.0 4.46e-01 97.3% 84.3%
2jl1A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 49.0 4.67e-01 92.6% 84.2%
2bkaA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 51.0 4.38e-01 98.0% 81.8%
7uuim01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 46.0 4.58e-01 88.6% 92.4%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.56 51.0 3.69e-01 100.0% 93.0%
5enzA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.56 46.0 4.51e-01 99.3% 81.4%
1ig3A02 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.56 47.0 4.79e-01 91.9% 95.9%
3oc4B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 50.0 4.69e-01 98.7% 90.7%
3dv9A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 47.0 4.56e-01 97.3% 80.6%
1f2dA01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 39.0 3.44e-01 71.1% 79.9%
1y1lA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 41.0 4.42e-01 99.3% 92.7%
1fcdA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 49.0 4.58e-01 98.0% 91.0%
3uykA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.55 49.0 4.50e-01 97.3% 93.9%
2p6pB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.55 51.0 4.51e-01 100.0% 91.9%
5uckB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 48.0 3.95e-01 98.0% 88.6%
1vqwA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 49.0 3.83e-01 100.0% 91.4%
1fzrA00 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.55 33.0 3.49e-01 82.6% 66.7%
3fi9A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 46.0 4.70e-01 90.6% 95.1%
7mjzA01 3.40.50.12160 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylthiotransferase, N-terminal domain 0.54 38.0 4.08e-01 91.9% 85.2%
4yrbA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 48.0 4.32e-01 98.0% 77.7%
6i3mE02 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.54 46.0 4.18e-01 91.9% 86.5%
3c4aA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 48.0 4.28e-01 99.3% 100.0%
2wesA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 48.0 3.36e-01 99.3% 70.6%
4emiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 48.0 4.54e-01 98.0% 92.6%
3oy2A02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 48.0 4.18e-01 99.3% 71.1%
2fexA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.53 45.0 4.22e-01 92.6% 83.4%
3rotA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 43.0 4.53e-01 88.6% 97.1%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 47.0 3.47e-01 98.0% 96.6%
3nksA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 47.0 3.37e-01 98.7% 97.8%
2myuA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 40.0 4.18e-01 100.0% 90.8%
2x5jQ01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 46.0 4.43e-01 97.3% 92.4%
2bpoA04 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.52 44.0 4.28e-01 91.3% 95.1%
6frlA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 46.0 3.28e-01 100.0% 70.5%
3geeA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 37.0 3.92e-01 92.6% 83.5%
4dqlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.51 44.0 4.30e-01 93.3% 95.0%
5kzkA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.50 43.0 4.26e-01 99.3% 89.1%
ECOD (91)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979563 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.84 81.0 6.26e-01 100.0% 54.5%
5003321 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.84 80.0 6.27e-01 100.0% 55.8%
4943588 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.83 79.0 6.32e-01 100.0% 58.5%
5041746 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.81 77.0 6.11e-01 100.0% 61.5%
5078148 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.81 77.0 5.94e-01 100.0% 57.9%
5012450 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.81 75.0 6.25e-01 100.0% 61.3%
3595867 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.81 77.0 6.59e-01 100.0% 85.0%
4903237 2005.1.1.47 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans 0.80 70.0 6.72e-01 100.0% 81.7%
3958329 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.80 76.0 6.39e-01 100.0% 70.2%
3712550 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.79 75.0 5.19e-01 100.0% 41.6%
3615706 327.3.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.79 75.0 5.18e-01 100.0% 41.3%
4375692 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.79 75.0 6.38e-01 100.0% 67.1%
3618577 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.79 75.0 5.92e-01 100.0% 64.3%
4101393 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.79 75.0 6.23e-01 100.0% 66.7%
5073067 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.79 75.0 6.82e-01 100.0% 82.1%
5026536 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.79 74.0 5.96e-01 100.0% 64.4%
3982277 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.79 71.0 6.27e-01 96.0% 89.5%
4202670 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.78 75.0 6.36e-01 100.0% 68.0%
5010330 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.78 74.0 5.80e-01 100.0% 60.7%
None — 0.78 74.0 6.68e-01 100.0% 83.6%
None — 0.78 74.0 6.33e-01 100.0% 80.0%
4163031 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.78 74.0 6.31e-01 100.0% 67.1%
4101096 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.78 73.0 6.21e-01 100.0% 69.1%
4322077 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.77 73.0 6.25e-01 100.0% 68.4%
3503191 2005.1.1.47 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans 0.77 73.0 6.43e-01 100.0% 78.1%
None — 0.77 73.0 6.60e-01 100.0% 83.1%
None — 0.77 73.0 6.51e-01 100.0% 80.5%
None — 0.77 73.0 6.49e-01 100.0% 80.5%
5026578 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.77 73.0 5.96e-01 100.0% 71.1%
5029640 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.77 72.0 6.29e-01 100.0% 78.1%
5039281 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.76 72.0 6.40e-01 100.0% 82.9%
None — 0.76 72.0 6.16e-01 100.0% 80.4%
4675904 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.76 72.0 6.01e-01 100.0% 62.6%
3558070 327.3.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.76 71.0 4.86e-01 100.0% 39.7%
5048385 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.75 72.0 5.56e-01 100.0% 56.3%
None — 0.75 71.0 4.85e-01 100.0% 40.0%
None — 0.75 71.0 6.01e-01 100.0% 68.7%
3248035 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.75 71.0 5.82e-01 100.0% 71.0%
5071227 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.75 72.0 5.53e-01 100.0% 62.3%
4981666 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.75 69.0 6.56e-01 100.0% 84.7%
5060990 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.75 72.0 5.68e-01 100.0% 58.6%
4996081 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.75 70.0 5.32e-01 100.0% 53.6%
5022630 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.75 72.0 5.68e-01 100.0% 55.1%
None — 0.75 70.0 5.98e-01 100.0% 67.8%
4957756 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.75 71.0 5.36e-01 100.0% 60.4%
4960192 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.75 70.0 6.50e-01 100.0% 81.7%
4483631 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.75 71.0 5.59e-01 100.0% 66.4%
5021368 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.75 71.0 5.37e-01 100.0% 63.1%
4262428 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.74 71.0 5.41e-01 100.0% 65.2%
4386055 2005.1.1.47 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans 0.74 71.0 5.79e-01 100.0% 59.6%
None — 0.74 71.0 5.77e-01 100.0% 58.4%
4038581 2005.1.1.47 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans 0.74 71.0 5.63e-01 100.0% 56.0%
None — 0.74 71.0 5.72e-01 100.0% 58.1%
4263013 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.74 70.0 5.61e-01 100.0% 54.8%
4395650 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.74 71.0 5.85e-01 100.0% 61.3%
4936084 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.74 70.0 6.48e-01 100.0% 82.2%
4648784 2005.1.1.47 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans 0.74 71.0 5.62e-01 100.0% 55.2%
4644409 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.74 70.0 5.65e-01 100.0% 57.0%
4180687 2005.1.1.23 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA_Me_trans 0.74 70.0 6.13e-01 100.0% 83.3%
4052372 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.74 70.0 5.63e-01 100.0% 60.4%
4061833 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.74 70.0 5.49e-01 100.0% 67.7%
4511920 2005.1.1.47 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans 0.73 69.0 6.15e-01 100.0% 84.9%
5056286 2005.1.1.8 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Arginosuc_synth 0.73 69.0 6.42e-01 100.0% 88.3%
3603515 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.73 59.0 5.21e-01 100.0% 61.0%
2323953 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.72 64.0 6.19e-01 100.0% 84.2%
5036187 2005.1.1.8 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Arginosuc_synth 0.72 68.0 6.16e-01 100.0% 81.5%
4968614 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.72 68.0 5.65e-01 100.0% 79.6%
4963305 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.71 55.0 5.80e-01 94.0% 90.2%
4995736 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.70 64.0 5.73e-01 100.0% 71.7%
4950705 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.69 57.0 6.11e-01 95.3% 99.2%
5083154 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.66 54.0 5.69e-01 91.9% 94.8%
5019369 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.63 55.0 4.24e-01 93.3% 61.8%
4931780 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.63 59.0 5.67e-01 100.0% 90.3%
4505600 2003.1.1.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_4 0.62 56.0 4.16e-01 100.0% 63.7%
3788459 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.62 56.0 4.15e-01 100.0% 93.3%
3722044 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.60 54.0 4.75e-01 99.3% 88.9%
3648168 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.60 53.0 4.52e-01 94.6% 64.4%
3733860 2006.1.1.28 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › APP1_cat 0.59 53.0 4.29e-01 97.3% 67.9%
3977666 2003.1.1.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.58 53.0 4.18e-01 100.0% 65.0%
4134001 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.58 49.0 4.24e-01 91.3% 97.8%
5076778 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.57 48.0 4.50e-01 98.0% 73.0%
3658781 7517.1.1.1 ↗ a/b three-layered sandwiches › Nucleoside hydrolase › Nucleoside hydrolase › Nucleoside hydrolase › IU_nuc_hydro 0.57 51.0 4.02e-01 100.0% 97.5%
3785708 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.56 50.0 3.82e-01 98.0% 96.3%
4316882 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.56 50.0 4.62e-01 98.0% 90.0%
4339599 2004.1.1.201 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 0.56 49.0 4.30e-01 99.3% 93.2%
3880654 2003.1.1.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Slo-like_RCK 0.55 49.0 3.57e-01 98.0% 89.9%
3940105 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 49.0 4.07e-01 100.0% 93.0%
4999552 2003.1.1.43 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_3 0.54 48.0 4.74e-01 98.0% 90.6%
4396298 7514.1.1.1 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.54 45.0 4.50e-01 91.3% 94.8%
3514950 7514.1.1.1 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.52 44.0 4.43e-01 92.6% 95.5%
3587991 2002.1.1.50 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › F_bP_aldolase 0.50 45.0 3.62e-01 97.3% 85.8%
D2 high residues 73-129
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iu5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.59 41.0 3.30e-01 86.0% 36.8%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.58 45.0 3.44e-01 89.5% 65.8%
2gs4A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 51.0 3.67e-01 98.2% 79.1%
1ikpA02 3.90.1350.10 Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain 0.55 46.0 3.45e-01 98.2% 39.2%
4ewcA03 1.20.120.1660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.50 39.0 3.75e-01 96.5% 93.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077772 7014.1.1.2 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.63 47.0 3.04e-01 80.7% 64.8%
5016140 5060.1.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 0.58 42.0 3.52e-01 82.5% 99.1%
3337820 101.1.1.123 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MCRS_N 0.54 44.0 4.00e-01 98.2% 66.3%
3827215 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 41.0 3.02e-01 84.2% 34.7%
3509989 101.1.1.123 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MCRS_N 0.51 42.0 3.89e-01 96.5% 70.7%
3216519 197.1.1.3 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP 0.50 38.0 3.43e-01 89.5% 83.3%
D3 high residues 229-304
PDB
Domain cluster: rep: OY731444.1__CAJ1889135.1__AUSP0021_00029__00029__D165-238
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6pqhA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 50.0 3.18e-01 98.7% 45.4%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 38.0 4.22e-01 100.0% 91.4%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.54 46.0 4.01e-01 100.0% 82.7%
5ffdA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 43.0 3.55e-01 89.5% 84.7%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 44.0 3.95e-01 96.1% 89.1%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3948769 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.82 61.0 3.92e-01 100.0% 18.2%
3385031 109.4.1.1455 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27814 0.60 52.0 3.63e-01 100.0% 45.6%
5044480 7566.1.1.2 ↗ a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › GTP-bdg_N 0.52 40.0 3.13e-01 84.2% 68.9%
5016836 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.51 43.0 3.22e-01 96.1% 57.6%
5040740 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.51 43.0 3.18e-01 94.7% 85.1%