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NC_009236.1__YP_001111168.1__BPSphiE122_0018__00018
Bact-VirNC_009236.1__YP_001111168.1__BPSphiE122_0018__00018
Identity
- Accession:
- NC_009236 ↗
- Kingdom:
- phage
Quality
92.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Peduoviridae›
Duodecimduovirus›
Burkholderia_phage_phiE12-2
TaxID: 2881401
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-68
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jb0E00 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 59.0 | 5.62e-01 | 86.7% | 94.2% |
| 2heqA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 54.0 | 5.63e-01 | 83.3% | 100.0% |
| 3d54D00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.56 | 45.0 | 3.22e-01 | 95.0% | 73.6% |
| 2vseA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.53 | 39.0 | 3.17e-01 | 85.0% | 98.6% |
| 2hu9A01 | 2.20.25.270 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.53 | 39.0 | 3.89e-01 | 80.0% | 78.7% |
| 3c8iA00 | 2.40.410.10 | Mainly Beta › Beta Barrel › putative membrane protein from Corynebacterium diphtheriae fold › putative membrane protein from Corynebacterium diphtheriae superfamily | 0.52 | 45.0 | 3.61e-01 | 100.0% | 82.7% |
| 4kbxA01 | 2.40.37.30 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › | 0.52 | 37.0 | 2.53e-01 | 85.0% | 20.1% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 41.0 | 4.15e-01 | 95.0% | 96.6% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032123 | 4112.1.1.1 ↗ | beta duplicates or obligate multimers › YopX, N-terminal domain-like › YopX, N-terminal domain-like › YopX, N-terminal domain-like › YopX | 0.68 | 57.0 | 5.71e-01 | 100.0% | 91.7% |
| 4976701 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 43.0 | 4.63e-01 | 88.3% | 88.0% |
| 4026274 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 52.0 | 4.13e-01 | 100.0% | 92.1% |
| 3448216 | 4.1.1.421 ↗ | beta barrels › SH3 › SH3 › SH3 › ARF_AD | 0.62 | 53.0 | 5.11e-01 | 96.7% | 90.0% |
| 4271087 | 4.1.1.444 ↗ | beta barrels › SH3 › SH3 › SH3 › SplA | 0.61 | 52.0 | 5.00e-01 | 100.0% | 82.9% |
| 3678872 | 4.1.1.239 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O | 0.59 | 51.0 | 4.77e-01 | 98.3% | 92.0% |
| 5074404 | 375.1.4.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C | 0.57 | 44.0 | 4.53e-01 | 83.3% | 92.7% |
| 4350188 | 3504.2.1.1 ↗ | beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco | 0.56 | 45.0 | 3.54e-01 | 100.0% | 68.1% |
| 3740784 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 44.0 | 4.02e-01 | 95.0% | 76.5% |
| 184619 | 375.11.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain in CopZ › Zinc-binding domain in CopZ › zf_CopZ | 0.54 | 38.0 | 3.88e-01 | 80.0% | 78.3% |
| 5038213 | 375.1.4.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C | 0.54 | 40.0 | 4.23e-01 | 80.0% | 98.0% |
| 3626389 | 4.1.1.310 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26050 | 0.53 | 44.0 | 3.94e-01 | 96.7% | 73.3% |
| 5051702 | 375.1.4.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C | 0.53 | 41.0 | 4.21e-01 | 100.0% | 94.5% |
| 4508428 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.51 | 43.0 | 3.81e-01 | 100.0% | 68.4% |
| 3188402 | 4099.1.1.31 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF26204 | 0.51 | 36.0 | 2.63e-01 | 76.7% | 31.0% |
| 4210485 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.51 | 40.0 | 3.94e-01 | 90.0% | 83.1% |
| 4072840 | 375.1.4.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C | 0.50 | 35.0 | 3.71e-01 | 75.0% | 100.0% |