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NC_009237.1__YP_001111204.1__BTHphiE255_0004__00004
Bact-VirNC_009237.1__YP_001111204.1__BTHphiE255_0004__00004
Identity
- Accession:
- NC_009237 ↗
- Kingdom:
- phage
Quality
86.1
mean pLDDT
Taxonomy
TaxID: 2883942
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-120
Domain cluster:
rep: OQ059336.1__WBF05284.1__X__00022__D13-109
D2
medium
residues 136-206
Domain cluster:
rep: NC_009813.1__YP_001468708.1__LiPB054_gp04__00004__D205-269
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04233.20 best | Phage_Mu_F | 73.7 | 2.90e-20 | 76.1% | 47.3% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2npnA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.60 | 45.0 | 3.96e-01 | 83.1% | 53.2% |
| 1m4kA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 43.0 | 3.84e-01 | 90.1% | 57.1% |
| 5iqlA00 | 2.60.40.1970 | Mainly Beta › Sandwich › Immunoglobulin-like › YEATS domain | 0.58 | 42.0 | 3.54e-01 | 84.5% | 43.8% |
| 1s4dE02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.57 | 44.0 | 3.58e-01 | 94.4% | 43.2% |
| 1whxA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 43.0 | 3.87e-01 | 85.9% | 75.7% |
| 3kfwX02 | 3.30.70.2650 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 47.0 | 4.55e-01 | 94.4% | 92.7% |
| 3v4mB00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 46.0 | 4.16e-01 | 93.0% | 99.0% |
| 2wbrA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 42.0 | 4.04e-01 | 84.5% | 91.0% |
| 3orqA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.57 | 37.0 | 3.87e-01 | 85.9% | 76.2% |
| 4qu6A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 41.0 | 3.91e-01 | 84.5% | 97.8% |
| 4xl1E01 | 2.60.40.3510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 44.0 | 3.47e-01 | 91.5% | 64.5% |
| 1a2vA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.53 | 45.0 | 2.80e-01 | 97.2% | 33.9% |
| 1mg7A01 | 3.30.70.1000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like | 0.53 | 40.0 | 3.14e-01 | 85.9% | 88.0% |
| 2f3jA02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 37.0 | 3.41e-01 | 74.6% | 93.9% |
| 5tipA02 | 2.70.9.20 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Major capsid protein Vp54 | 0.52 | 41.0 | 2.96e-01 | 87.3% | 64.2% |
| 4p04A01 | 2.60.40.3100 | Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain | 0.52 | 39.0 | 3.50e-01 | 85.9% | 55.7% |
| 5uzgA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 41.0 | 3.85e-01 | 88.7% | 100.0% |
| 1hx6A02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 38.0 | 3.18e-01 | 83.1% | 73.0% |
| 1itpA00 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.51 | 35.0 | 3.49e-01 | 73.2% | 94.8% |
| 4qpiB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 38.0 | 2.84e-01 | 85.9% | 59.4% |
| 1s6lA02 | 3.15.10.60 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Alkylmercury lyase | 0.50 | 38.0 | 3.21e-01 | 83.1% | 45.7% |
| 3kptA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 38.0 | 3.43e-01 | 85.9% | 67.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032640 | 601.19.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F | 0.86 | 69.0 | 4.37e-01 | 95.8% | 19.4% |
| 3964369 | 6108.1.1.8 ↗ | alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Phage_Mu_F | 0.82 | 64.0 | 4.29e-01 | 83.1% | 25.2% |
| 3946757 | 601.19.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F | 0.70 | 52.0 | 3.66e-01 | 80.3% | 26.2% |
| 3673136 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 45.0 | 3.65e-01 | 84.5% | 82.8% |
| 3462792 | 206.1.3.57 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › FAM91_C | 0.59 | 49.0 | 3.28e-01 | 94.4% | 23.2% |
| 3999160 | 2004.1.1.542 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5, AAA_7 | 0.57 | 39.0 | 2.37e-01 | 73.2% | 43.1% |
| 4616644 | 521.1.1.1 ↗ | beta sandwiches › Ecotin, trypsin inhibitor › Ecotin, trypsin inhibitor › Ecotin, trypsin inhibitor › Ecotin | 0.57 | 45.0 | 3.64e-01 | 87.3% | 86.4% |
| 5019 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.56 | 42.0 | 4.21e-01 | 88.7% | 78.4% |
| 3999424 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.55 | 45.0 | 3.96e-01 | 93.0% | 92.7% |
| 3894990 | 304.9.1.77 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28441 | 0.55 | 44.0 | 3.78e-01 | 93.0% | 72.8% |
| 3166220 | 304.8.1.29 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF695 | 0.54 | 40.0 | 3.46e-01 | 85.9% | 74.6% |
| 3624262 | 101.1.2.115 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDC27 | 0.53 | 44.0 | 3.48e-01 | 91.5% | 58.0% |
| 3740598 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 43.0 | 3.37e-01 | 91.5% | 55.5% |
| 3406669 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 3.52e-01 | 81.7% | 61.0% |
| 3388764 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 39.0 | 3.16e-01 | 81.7% | 58.5% |
| 3997615 | 2484.1.1.153 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1744 | 0.51 | 39.0 | 2.69e-01 | 88.7% | 33.7% |
| 4942451 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 40.0 | 3.56e-01 | 90.1% | 59.1% |
| 3237590 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.50 | 38.0 | 3.40e-01 | 84.5% | 73.3% |
D3
medium
residues 207-278
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mj3B00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 40.0 | 2.68e-01 | 72.2% | 61.3% |
| 1k32A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 42.0 | 2.76e-01 | 93.1% | 51.1% |
| 7a6pB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 36.0 | 3.03e-01 | 79.2% | 54.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3714670 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.56 | 37.0 | 3.27e-01 | 70.8% | 45.7% |
| 3933012 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 39.0 | 2.40e-01 | 76.4% | 36.6% |
| 3480132 | 5.1.4.156 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 | 0.54 | 44.0 | 2.70e-01 | 97.2% | 46.3% |
| 4944433 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.53 | 34.0 | 2.99e-01 | 70.8% | 40.9% |
| 3307397 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 35.0 | 2.97e-01 | 70.8% | 65.0% |
| None | — | 0.52 | 43.0 | 2.51e-01 | 97.2% | 36.3% | |
| 3226366 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.51 | 43.0 | 2.79e-01 | 100.0% | 76.5% |
| 3255969 | 2004.1.1.174 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Elong_Iki1 | 0.51 | 35.0 | 2.43e-01 | 72.2% | 20.1% |
| 3676329 | 5.1.4.15 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 | 0.51 | 43.0 | 2.94e-01 | 97.2% | 62.9% |