←Back to structures

NC_009237.1__YP_001111252.1__BTHphiE255_0052__00052

Bact-Vir

NC_009237.1__YP_001111252.1__BTHphiE255_0052__00052

Identity

Accession:
NC_009237 ↗
Kingdom:
phage

Quality

92.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bcepmuvirus› Burkholderia_phage_phiE255

TaxID: 2883942

Cluster

View cluster (41 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 29-119
PDB
Domain cluster: rep: NC_048639.1__YP_009830587.1__HWA94_gp16__00016__D331-429
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01464.26 best SLT 36.2 5.60e-09 93.4% 52.1%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yibA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.94 85.0 6.82e-01 100.0% 54.4%
3bkhA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.91 86.0 6.63e-01 100.0% 52.7%
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.88 82.0 6.45e-01 100.0% 52.0%
6cfcA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.85 76.0 6.13e-01 98.9% 53.4%
4hjzA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.84 80.0 6.16e-01 100.0% 50.8%
4c5fA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.84 79.0 6.28e-01 100.0% 56.0%
3w6bB00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.83 77.0 6.40e-01 100.0% 60.8%
7k5cB01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.81 70.0 5.71e-01 96.7% 52.8%
1xsfA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.72 55.0 5.24e-01 92.3% 68.5%
1te2A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 33.0 3.69e-01 93.4% 56.9%
4ou7A00 1.10.8.1180 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 38.0 4.10e-01 98.9% 84.5%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.55 31.0 3.31e-01 81.3% 62.8%
3hdeC00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.53 39.0 3.29e-01 80.2% 45.7%
7dl9A01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.53 37.0 2.95e-01 73.6% 50.5%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 38.0 3.27e-01 78.0% 97.4%
1d1dA01 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.52 38.0 3.39e-01 80.2% 82.1%
1xwjA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.50 40.0 3.66e-01 90.1% 95.4%
1werA02 1.10.506.10 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 0.50 36.0 3.08e-01 74.7% 79.1%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979308 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.99 96.0 7.36e-01 100.0% 51.4%
4321901 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.94 77.0 5.91e-01 100.0% 42.2%
3965879 235.1.1.32 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 0.94 85.0 6.73e-01 100.0% 52.1%
3978377 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.94 77.0 5.80e-01 100.0% 40.0%
4164050 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.93 77.0 5.69e-01 100.0% 38.0%
3944103 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.93 78.0 6.01e-01 100.0% 44.4%
3582448 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.92 77.0 6.68e-01 100.0% 60.8%
3945171 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.91 78.0 6.51e-01 100.0% 56.6%
1175858 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.91 86.0 6.54e-01 100.0% 50.8%
3964630 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.89 77.0 6.14e-01 100.0% 50.0%
3941811 235.1.1.32 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 0.88 82.0 6.48e-01 100.0% 52.9%
3971115 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.87 74.0 5.87e-01 100.0% 48.2%
3385979 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.87 77.0 5.85e-01 100.0% 44.7%
5028353 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.86 81.0 6.28e-01 100.0% 57.8%
3969917 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.86 76.0 5.71e-01 100.0% 42.5%
4258903 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.86 81.0 6.47e-01 100.0% 56.4%
4515466 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 80.0 6.22e-01 100.0% 52.2%
3289359 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 80.0 6.22e-01 100.0% 53.3%
4530587 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 80.0 6.16e-01 100.0% 50.8%
3839661 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 76.0 6.05e-01 100.0% 51.2%
3254511 235.1.1.1 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys 0.84 70.0 6.67e-01 95.6% 76.2%
3166094 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.84 80.0 6.22e-01 100.0% 53.7%
3381140 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.84 78.0 6.12e-01 100.0% 53.9%
2393514 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 79.0 6.00e-01 100.0% 48.9%
3657952 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 77.0 5.82e-01 100.0% 56.0%
4995668 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.82 68.0 6.01e-01 86.8% 68.3%
4455133 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.77 57.0 5.87e-01 96.7% 81.8%
185214 235.1.1.14 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transglycosylas 0.74 55.0 5.65e-01 92.3% 80.7%
4498700 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.65 45.0 4.35e-01 100.0% 64.0%
4258677 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.62 44.0 3.24e-01 100.0% 29.8%
None — 0.59 41.0 3.14e-01 100.0% 30.0%
3190417 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.56 40.0 3.80e-01 75.8% 91.8%
3390058 2006.1.1.44 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.54 39.0 2.92e-01 96.7% 28.3%
3763861 197.1.1.1 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M 0.53 34.0 2.83e-01 85.7% 36.3%
3732116 5050.1.1.12 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › TRI12 0.53 39.0 2.92e-01 76.9% 44.1%
3724166 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.53 33.0 3.72e-01 76.9% 87.7%
3660430 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 38.0 2.91e-01 79.1% 50.2%
3518127 109.4.1.1125 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TAF2_C 0.51 37.0 2.57e-01 78.0% 30.6%
D2 medium residues 120-196
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.75 62.0 4.97e-01 88.3% 91.7%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.69 40.0 4.12e-01 97.4% 59.2%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.66 45.0 4.22e-01 97.4% 56.8%
3w0fA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.65 48.0 3.98e-01 100.0% 44.9%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 51.0 5.17e-01 89.6% 100.0%
3hzrA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.62 37.0 3.28e-01 94.8% 40.5%
2gf4A00 1.20.1270.110 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 0.61 44.0 4.23e-01 100.0% 67.0%
1tdzA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 46.0 3.85e-01 100.0% 47.8%
1k8kF00 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 47.0 3.69e-01 97.4% 43.1%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.55 38.0 3.69e-01 71.4% 90.8%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.55 35.0 3.60e-01 90.9% 65.8%
4h3tA02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.55 44.0 3.71e-01 90.9% 89.4%
1dm1A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 40.0 3.34e-01 79.2% 99.3%
2el7A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.54 34.0 3.20e-01 93.5% 50.0%
1ichA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.53 42.0 4.06e-01 89.6% 78.2%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 38.0 3.56e-01 81.8% 64.6%
1w36F02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 39.0 3.66e-01 85.7% 95.0%
4rm7A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 38.0 3.32e-01 81.8% 53.3%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979308 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.99 95.0 6.90e-01 100.0% 43.4%
3971115 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.90 81.0 6.03e-01 100.0% 42.9%
3944103 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.89 80.0 5.86e-01 100.0% 40.6%
4321901 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.86 81.0 5.89e-01 100.0% 45.9%
3897972 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 44.0 4.52e-01 79.2% 77.3%
4057642 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 40.0 3.43e-01 70.1% 60.8%
3507722 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.57 46.0 4.38e-01 89.6% 74.7%
4632217 6056.1.1.2 ↗ alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.57 41.0 4.20e-01 90.9% 78.7%
2843 101.1.10.8 ↗ alpha arrays › HTH › HTH › Cyclin-like › CDK5_activator 0.57 45.0 3.71e-01 88.3% 67.1%
4559666 3265.1.1.1 ↗ alpha arrays › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › GIDA_C_1st 0.56 41.0 4.08e-01 83.1% 95.3%
3290796 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.54 47.0 3.59e-01 98.7% 92.4%
3728252 633.23.1.22 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.54 43.0 3.53e-01 90.9% 95.5%
5081189 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.53 42.0 3.47e-01 85.7% 63.6%
3815745 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.53 39.0 3.94e-01 80.5% 90.0%
4016408 2003.1.1.49 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Malic_M 0.53 45.0 3.12e-01 100.0% 96.6%
2523883 7073.1.1.1 ↗ alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M 0.52 43.0 4.08e-01 100.0% 95.1%
3687770 7073.1.1.1 ↗ alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M 0.51 42.0 3.78e-01 100.0% 87.5%
3392146 7073.1.1.1 ↗ alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M 0.51 42.0 3.93e-01 100.0% 93.3%