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NC_009447.1__YP_001210236.1__BcepGomrgene16__00016
Bact-VirNC_009447.1__YP_001210236.1__BcepGomrgene16__00016
Identity
- Accession:
- NC_009447 ↗
- Kingdom:
- phage
Quality
57.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 128-234_293-324
Domain cluster:
rep: OR354825.1__WNM51604.1__CoNPh2_CDS0050__00048__D273-380_559-584
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20155.5 best | TMP_3 | 46.3 | 6.00e-12 | 90.6% | 58.3% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k3fA00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.61 | 45.0 | 3.47e-01 | 77.0% | 87.3% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 30.0 | 3.79e-01 | 71.2% | 79.0% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.55 | 27.0 | 2.86e-01 | 100.0% | 49.6% |
| 8bb6A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.55 | 46.0 | 3.23e-01 | 92.1% | 90.3% |
| 5grqA00 | 1.10.8.810 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain | 0.54 | 33.0 | 3.93e-01 | 84.9% | 92.2% |
| 2b4vA01 | 1.10.1410.10 | Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › | 0.52 | 41.0 | 3.56e-01 | 82.7% | 79.0% |
| 3fi7A01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.51 | 41.0 | 4.24e-01 | 84.2% | 100.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963765 | 159.1.2.5 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 | 0.85 | 78.0 | 6.93e-01 | 97.1% | 100.0% |
| 4032310 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.71 | 65.0 | 6.32e-01 | 98.6% | 100.0% |
| 5027816 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.64 | 24.0 | 2.81e-01 | 90.6% | 44.8% |
| 3804937 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.58 | 26.0 | 2.55e-01 | 98.6% | 36.3% |
| 4028254 | 601.2.1.5 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr | 0.54 | 27.0 | 2.93e-01 | 100.0% | 55.7% |
| 4242973 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.52 | 28.0 | 2.72e-01 | 97.8% | 43.8% |
D2
medium
residues 235-292
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2n80A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.66 | 53.0 | 4.59e-01 | 91.4% | 71.3% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.64 | 45.0 | 4.16e-01 | 75.9% | 100.0% |
| 3kxaA02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.62 | 47.0 | 4.62e-01 | 89.7% | 77.3% |
| 3fyaB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 48.0 | 4.44e-01 | 91.4% | 67.5% |
| 3uw3A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.59 | 40.0 | 2.73e-01 | 84.5% | 18.6% |
| 3h5tA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.59 | 40.0 | 4.33e-01 | 72.4% | 97.9% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.59 | 39.0 | 3.55e-01 | 72.4% | 50.0% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.56 | 37.0 | 3.64e-01 | 77.6% | 61.3% |
| 4bopB00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.56 | 46.0 | 3.53e-01 | 98.3% | 67.3% |
| 2ltuA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 44.0 | 4.33e-01 | 98.3% | 88.7% |
| 4bouA00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.54 | 44.0 | 3.47e-01 | 98.3% | 68.1% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 41.0 | 4.08e-01 | 91.4% | 86.2% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.54 | 47.0 | 4.27e-01 | 100.0% | 75.6% |
| 6fxfA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.54 | 39.0 | 3.80e-01 | 98.3% | 72.3% |
| 5ekdA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.53 | 43.0 | 3.53e-01 | 89.7% | 47.7% |
| 3oc2A01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.53 | 43.0 | 3.16e-01 | 94.8% | 31.8% |
| 2a6cA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 38.0 | 3.63e-01 | 87.9% | 68.4% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963765 | 159.1.2.5 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 | 0.73 | 62.0 | 4.40e-01 | 100.0% | 30.0% |
| 4034513 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.67 | 52.0 | 5.22e-01 | 89.7% | 85.0% |
| 2581392 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.65 | 49.0 | 4.68e-01 | 84.5% | 73.2% |
| 4173167 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.65 | 51.0 | 4.95e-01 | 89.7% | 83.1% |
| 3976255 | 101.1.4.17 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 | 0.63 | 49.0 | 4.61e-01 | 91.4% | 69.3% |
| 5026301 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.63 | 53.0 | 3.88e-01 | 98.3% | 43.5% |
| 5074725 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.62 | 45.0 | 4.47e-01 | 84.5% | 81.5% |
| 3974678 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.61 | 47.0 | 4.63e-01 | 91.4% | 80.0% |
| 2149196 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.61 | 47.0 | 4.57e-01 | 91.4% | 77.6% |
| 4990518 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.61 | 47.0 | 4.58e-01 | 89.7% | 86.2% |
| 3587398 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.60 | 45.0 | 4.52e-01 | 86.2% | 100.0% |
| 5003089 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.60 | 47.0 | 4.48e-01 | 91.4% | 74.3% |
| 3593198 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.60 | 44.0 | 4.62e-01 | 84.5% | 94.0% |
| 3963744 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.58 | 44.0 | 4.05e-01 | 91.4% | 62.5% |
| 4082890 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.58 | 45.0 | 3.95e-01 | 91.4% | 78.9% |
| 4010418 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.58 | 44.0 | 4.09e-01 | 91.4% | 65.0% |
| 3985012 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.58 | 43.0 | 4.07e-01 | 91.4% | 66.7% |
| 3824261 | 143.1.1.2 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › PABC_AtC3H46 | 0.57 | 46.0 | 4.54e-01 | 100.0% | 87.7% |
| 3986597 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.57 | 46.0 | 4.21e-01 | 98.3% | 67.1% |
| 3947056 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.56 | 44.0 | 4.21e-01 | 91.4% | 84.3% |
| 5061017 | 2006.1.1.14 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD | 0.56 | 44.0 | 3.08e-01 | 98.3% | 25.2% |
| 4264146 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.56 | 42.0 | 4.13e-01 | 91.4% | 76.5% |
| 3258669 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 39.0 | 3.39e-01 | 81.0% | 46.0% |
| 5080373 | 2006.1.1.14 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD | 0.51 | 39.0 | 2.77e-01 | 96.6% | 24.2% |
D3
medium
residues 325-378
D4
medium
residues 379-426
D5
medium
residues 530-678
D6
medium
residues 679-800