←Back to structures
NC_009514.1__YP_001272567.1__PcdtI_gp54__00054
Bact-VirNC_009514.1__YP_001272567.1__PcdtI_gp54__00054
Identity
- Accession:
- NC_009514 ↗
- Kingdom:
- phage
Quality
83.7
mean pLDDT
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-156_269-306
Domain cluster:
rep: OP172637.1__WAX05334.1__AC844P3_00005__00005__D2-164_267-294
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20505.4 best | DUF6731 | 29.8 | 6.30e-07 | 80.8% | 31.5% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ldkA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 42.0 | 4.35e-01 | 74.9% | 91.9% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 20.0 | 3.21e-01 | 74.9% | 85.9% |
| 3lydA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.54 | 38.0 | 4.31e-01 | 97.9% | 94.4% |
| 4r7kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 39.0 | 4.14e-01 | 77.0% | 91.1% |
| 4jhyA00 | 3.30.530.80 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.52 | 38.0 | 4.09e-01 | 74.9% | 94.9% |
| 4h5bA00 | 3.30.1460.70 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 33.0 | 3.63e-01 | 79.7% | 78.3% |
| 4l8hB00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.51 | 29.0 | 3.46e-01 | 81.8% | 81.3% |
| 3kvnA02 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.51 | 35.0 | 2.96e-01 | 70.1% | 71.8% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3941772 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.74 | 67.0 | 6.83e-01 | 98.9% | 98.9% |
| 1309699 | 881.1.1.11 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF5642 | 0.65 | 41.0 | 4.09e-01 | 98.9% | 60.5% |
| 3958869 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.64 | 46.0 | 4.32e-01 | 99.5% | 60.5% |
| 3889564 | 331.18.1.4 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B | 0.61 | 40.0 | 4.27e-01 | 97.3% | 76.2% |
| 3841571 | 331.18.1.0 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc | 0.60 | 41.0 | 4.19e-01 | 99.5% | 70.0% |
| 3484611 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.52 | 39.0 | 4.06e-01 | 75.9% | 95.3% |
| 3215615 | 11.1.1.532 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 | 0.51 | 27.0 | 3.51e-01 | 81.8% | 87.3% |
| 3687610 | 9.2.1.2 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg | 0.51 | 37.0 | 3.36e-01 | 73.3% | 90.4% |
| 3503101 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.51 | 31.0 | 3.37e-01 | 79.1% | 71.0% |
| 3712842 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.51 | 35.0 | 3.55e-01 | 99.5% | 71.1% |
| 3208809 | 9.2.1.2 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg | 0.50 | 36.0 | 3.31e-01 | 73.3% | 89.0% |
D2
high
residues 159-264
Domain cluster:
rep: MW478289.1__QTZ82801.1__phiCpA_00029__00029__D150-251
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7ewsB02 | 3.30.590.10 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain | 0.51 | 40.0 | 3.15e-01 | 87.7% | 87.5% |
| 1darA05 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 34.0 | 3.74e-01 | 82.1% | 85.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4965849 | 3435.1.1.9 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF4747 | 0.75 | 63.0 | 4.68e-01 | 99.1% | 37.3% |
| 4978378 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.57 | 43.0 | 4.71e-01 | 90.6% | 100.0% |
| 2557261 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.56 | 36.0 | 3.85e-01 | 88.7% | 73.9% |
| 5001356 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.53 | 38.0 | 2.52e-01 | 74.5% | 26.9% |
| 4933513 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.52 | 38.0 | 3.89e-01 | 78.3% | 100.0% |
| 3781966 | 304.53.1.1 ↗ | a+b two layers › Alpha-beta plaits › DOPA dioxygenase-like › DOPA dioxygenase-like › DOPA_dioxygen | 0.51 | 42.0 | 3.63e-01 | 91.5% | 65.9% |
| 3985253 | 304.28.1.8 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › YggL_50S_bp | 0.51 | 38.0 | 3.91e-01 | 81.1% | 82.5% |