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NC_009540.1__YP_001285574.1__PTLS_gp85__00085

Bact-Vir

NC_009540.1__YP_001285574.1__PTLS_gp85__00085

Identity

Accession:
NC_009540 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Tlsvirus› Escherichia_phage_Tls

TaxID: 2892339

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-57
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.65e-01 98.2% 92.0%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.58 49.0 3.97e-01 98.2% 51.8%
1t9fA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 46.0 3.39e-01 98.2% 94.4%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.00e-01 100.0% 60.5%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 48.0 3.95e-01 100.0% 55.2%
4s39A02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.54 38.0 3.09e-01 75.0% 79.3%
3qktD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 42.0 2.74e-01 92.9% 29.9%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 4.09e-01 100.0% 95.7%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.53 43.0 3.90e-01 94.6% 96.4%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.53 44.0 4.24e-01 98.2% 83.6%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.15e-01 98.2% 42.2%
1f2uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 40.0 3.14e-01 92.9% 43.6%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.52 44.0 3.92e-01 98.2% 78.6%
1smpI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.52 42.0 3.66e-01 100.0% 90.0%
8p2aA01 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.51 42.0 3.69e-01 94.6% 96.6%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.51 43.0 3.99e-01 98.2% 91.9%
1w4vA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 35.0 2.86e-01 73.2% 86.4%
1pqzA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.50 37.0 2.96e-01 85.7% 73.0%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.50 40.0 3.68e-01 98.2% 81.9%
2v4dE01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.50 35.0 3.11e-01 73.2% 69.0%
2iv2X01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.50 37.0 3.80e-01 85.7% 90.9%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3743052 5.1.4.78 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.62 50.0 3.02e-01 92.9% 25.1%
4348606 4.1.1.440 ↗ beta barrels › SH3 › SH3 › SH3 › PF27165 0.62 51.0 4.96e-01 100.0% 83.1%
3277720 375.1.1.185 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 0.62 40.0 4.69e-01 100.0% 95.0%
4585317 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.60 44.0 4.47e-01 98.2% 80.0%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.60 46.0 4.66e-01 100.0% 85.5%
4534931 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.60 43.0 3.97e-01 98.2% 58.7%
3675341 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.59 44.0 4.43e-01 100.0% 81.8%
3436022 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.59 43.0 4.41e-01 100.0% 81.8%
5011920 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 51.0 4.55e-01 100.0% 93.8%
3409554 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.58 49.0 4.21e-01 98.2% 94.7%
4169657 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.58 41.0 4.33e-01 98.2% 88.0%
4989867 1001.1.1.1 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 0.57 41.0 4.19e-01 78.6% 92.7%
3782542 6109.1.1.1 ↗ a+b two layers › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › ChAPs 0.56 46.0 3.26e-01 94.6% 30.0%
3425526 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.56 42.0 3.03e-01 83.9% 36.6%
3280935 300.1.1.12 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DUF5753 0.56 45.0 3.22e-01 94.6% 80.8%
3708283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.14e-01 98.2% 84.7%
3457561 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.55 45.0 3.30e-01 98.2% 85.3%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 40.0 3.84e-01 100.0% 67.1%
3713683 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.53 43.0 3.50e-01 92.9% 47.8%
4053957 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.53 37.0 3.88e-01 98.2% 88.0%
3977412 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.53 41.0 4.36e-01 96.4% 100.0%
3403082 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 41.0 2.94e-01 100.0% 37.4%
3656952 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 41.0 3.35e-01 94.6% 73.0%